Add ability to explore various values of AED and LD. #98

	name: Continuous Integration

	# Controls when the action will run. Triggers the workflow on push or pull request
	# events but only for the master branch, or add_actions branch
	on:
	push:
	branches: [ master, add_actions ]
	pull_request:
	branches: [ master, add_actions ]

	jobs:
	test_workflow:
	runs-on: ubuntu-latest

	env:
	NXF_VER: ${{ matrix.nxf_ver }}
	NXF_ANSI_LOG: false

	strategy:
	matrix:
	nxf_ver: ['21.10.6', '']
	profile:
	- docker
	workflow:
	- 'abinitio_training'
	- 'annotation_preprocessing'
	- 'functional_annotation'
	- 'transcript_assembly'

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v2

	- name: Install Nextflow
	run: \|
	wget -qO- get.nextflow.io \| bash
	sudo mv nextflow /usr/local/bin/

	# Use https://github.com/marketplace/actions/setup-conda to setup conda
	# - name: Setup Conda
	# uses: s-weigand/setup-conda@v1
	# with:
	# update-conda: true

	# - name: Alias local interproscan to docker container.
	# run: alias interproscan.sh='docker run biocontainers/interproscan:v5.30-69.0_cv3 /opt/interproscan/interproscan.sh'

	- name: Test ${{ matrix.workflow }} with profile ${{ matrix.profile }}
	run: nextflow run -profile test,${{ matrix.profile }} main.nf --subworkflow ${{ matrix.workflow }}

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