set up community build settings and bug fixes

.gitignore

@@ -1 +1,2 @@
 build*/
+.*.swp

CMakeLists.txt

@@ -185,7 +185,9 @@ project(GSI)
     find_package( LAPACK )
   endif()
 # build the WRF I/O libraries
-  if(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/libsrc/wrflib)
+  if(DEFINED ENV{GSIWRF_LIB})
+    set(wrflib "$ENV{GSIWRF_LIB}" CACHE INTERNAL "WRFIO library" )
+  elseif(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/libsrc/wrflib)
     add_subdirectory(libsrc/wrflib)
   else()
     message("libsrc/wrflib not pulled from git, looking for WRF dependencies locally")
@@ -230,12 +232,12 @@ project(GSI)
   find_package( IP )
 
   if(BUILD_NCDIAG)
-    set(NCDIAG_INCS "${PROJECT_BINARY_DIR}/libsrc/ncdiag/include")
+    set(NCDIAG_INCS "${PROJECT_BINARY_DIR}/src/ncdiag/include")
     add_subdirectory(src/ncdiag)
     set(NCDIAG_LIBRARIES ncdiag )
   endif(BUILD_NCDIAG)
   if(BUILD_FV3GFS_NCIO)
-    set(FV3GFS_NCIO_INCS "${PROJECT_BINARY_DIR}/libsrc/fv3gfs_ncio/include")
+    set(FV3GFS_NCIO_INCS "${PROJECT_BINARY_DIR}/src/fv3gfs_ncio/include")
     add_subdirectory(src/fv3gfs_ncio)
     set(FV3GFS_NCIO_LIBRARIES fv3gfs_ncio )
   endif(BUILD_FV3GFS_NCIO)
@@ -255,9 +257,9 @@ project(GSI)
   find_package( IP )
 
   if(BUILD_GSDCLOUD_ARW)
-    set(GSDCLOUD_DIR "${CMAKE_SOURCE_DIR}/libsrc/GSD/gsdcloud")
+    set(GSDCLOUD_DIR "${CMAKE_SOURCE_DIR}/src/GSD/gsdcloud")
     set(gsdcloud gsdcloud_arw)
-    add_subdirectory(libsrc/GSD/gsdcloud)
+    add_subdirectory(src/GSD/gsdcloud)
     set(GSDCLOUD_LIBRARY ${gsdcloud} )
   else(BUILD_GSDCLOUD_ARW)
     set(GSDCLOUD_LIBRARY "")

cmake/Modules/platforms/Generic.cmake

@@ -11,4 +11,14 @@ macro (setGeneric)
   set(GSI_Intel_Platform_FLAGS "-DPOUND_FOR_STRINGIFY -O3 -fp-model source -assume byterecl -convert big_endian -g -traceback -D_REAL8_ ${OpenMP_Fortran_FLAGS} ${MPI_Fortran_COMPILE_FLAGS}" CACHE INTERNAL "GSI Fortran Flags")
   set(ENKF_Platform_FLAGS "-O3 ${HOST_FLAG} -warn all -implicitnone -traceback -fp-model strict -convert big_endian -DGFS -D_REAL8_  ${OpenMP_Fortran_FLAGS}" CACHE INTERNAL "ENKF Fortran Flags")
 
+  message("setting values for corelibs")
+  set(BUILD_BUFR "OFF" CACHE INTERNAL "Build the BUFR library" )
+  set(BUILD_BACIO "OFF" CACHE INTERNAL "Build the BACIO library" )
+  set(BUILD_SFCIO "OFF" CACHE INTERNAL "Build the SFCIO library" )
+  set(BUILD_SIGIO "OFF" CACHE INTERNAL "Build the SIGIO library" )
+  set(BUILD_NEMSIO "OFF" CACHE INTERNAL "Build the NEMSIO library" )
+  set(BUILD_SP "OFF" CACHE INTERNAL "Build the SP library" )
+  set(BUILD_CRTM "OFF" CACHE INTERNAL "Build the CRTM library" )
+  set(BUILD_W3EMC "OFF" CACHE INTERNAL "Build the EMC library" )
+  set(BUILD_NCO "OFF" CACHE INTERNAL "Build the NCO library" )
 endmacro()

cmake/Modules/setGNUFlags.cmake

@@ -27,6 +27,7 @@ function (setGNU)
     set(W3NCO_C_FLAGS " -DLINUX -O3 -fconvert=big-endian -ffast-math -fno-second-underscore -frecord-marker=4 -funroll-loops -ggdb -static -Wall -fno-range-check  -D_REAL8_ -fopenmp" CACHE INTERNAL "")
     set(WRFLIB_Fortran_FLAGS " -O3 -fconvert=big-endian -ffast-math -fno-second-underscore -frecord-marker=4 -funroll-loops -ggdb -static -Wall -fno-range-check -D_REAL8_ -fopenmp -ffree-line-length-0" CACHE INTERNAL "")
     set( NCDIAG_Fortran_FLAGS "-ffree-line-length-none" CACHE INTERNAL "" )
+    set( FV3GFS_NCIO_Fortran_FLAGS "-ffree-line-length-none" CACHE INTERNAL "" )
     set( NDATE_Fortran_FLAGS "-fconvert=big-endian -DCOMMCODE -DLINUX -DUPPLITTLEENDIAN -O3 -Wl,-noinhibit-exec" CACHE INTERNAL "")
     set( COV_CALC_FLAGS "-c -O3 -fconvert=little-endian -ffast-math -ffree-form -fno-second-underscore -frecord-marker=4 -funroll-loops -ggdb -static -Wall -fopenmp" CACHE INTERNAL "")
     set(GSDCLOUD_Fortran_FLAGS "-O3 -fconvert=big-endian" CACHE INTERNAL "")
@@ -56,6 +57,7 @@ function (setGNU)
     set(W3NCO_C_FLAGS " -DLINUX -g -fbacktrace -fconvert=big-endian -ffast-math -fno-second-underscore -frecord-marker=4 -funroll-loops -g -ggdb -static -Wall -fno-range-check  -D_REAL8_ -fopenmp" CACHE INTERNAL "")
     set(WRFLIB_Fortran_FLAGS " -g -fbacktrace -fconvert=big-endian -ffast-math -fno-second-underscore -frecord-marker=4 -funroll-loops -g -ggdb -static -Wall -fno-range-check -D_REAL8_ -fopenmp -ffree-line-length-0" CACHE INTERNAL "")
     set( NCDIAG_Fortran_FLAGS "-ffree-line-length-none" CACHE INTERNAL "" )
+    set( FV3GFS_NCIO_Fortran_FLAGS "-ffree-line-length-none" CACHE INTERNAL "" )
     set( NDATE_Fortran_FLAGS "-fconvert=big-endian -DCOMMCODE -DLINUX -DUPPLITTLEENDIAN -g -fbacktrace -Wl,-noinhibit-exec" CACHE INTERNAL "")
     set( COV_CALC_FLAGS "-c -O3 -fconvert=little-endian -ffast-math -ffree-form -fno-second-underscore -frecord-marker=4 -funroll-loops -ggdb -static -Wall -fopenmp" CACHE INTERNAL "")
     set(GSDCLOUD_Fortran_FLAGS "-O3 -fconvert=big-endian" CACHE INTERNAL "")