Add ability to read increment files on native cubed sphere grid #472
Workflow file for this run
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| # This is a CI workflow for the fv3atm project. | |
| # | |
| # This workflow builds and tests the fv3atm library using GCC, and it tests | |
| # different CMake build options. | |
| # | |
| # Alex Richert, 6 Dec 2023 | |
| name: GCC | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| pull_request: | |
| branches: | |
| - develop | |
| jobs: | |
| build_spack: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| gcc_ver: ["12"] | |
| mpi: ["mpich", "openmpi"] | |
| steps: | |
| - name: checkout-fv3atm | |
| uses: actions/checkout@v4 | |
| with: | |
| path: ${{ github.workspace }}/fv3atm | |
| submodules: recursive | |
| - name: install-cmake | |
| run: | | |
| cd ${{ github.workspace }} | |
| curl -f -s -S -R -L https://github.com/Kitware/CMake/releases/download/v3.29.2/cmake-3.29.2-Linux-x86_64.tar.gz | tar -zx | |
| echo "${{ github.workspace }}/cmake-3.29.2-linux-x86_64/bin" >> $GITHUB_PATH | |
| - name: cache-spack | |
| id: cache-spack | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/spack-develop | |
| key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }} | |
| # Building dependencies takes 40+ min | |
| - name: spack-install | |
| if: steps.cache-spack.outputs.cache-hit != 'true' | |
| run: | | |
| wget --no-verbose https://github.com/spack/spack/archive/refs/heads/develop.zip | |
| unzip develop.zip -d ${GITHUB_WORKSPACE}/ &> unzip.out | |
| . ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
| spack env create gcc${{ matrix.gcc_ver }} ${GITHUB_WORKSPACE}/fv3atm/ci/spack.yaml | |
| spack env activate gcc${{ matrix.gcc_ver }} | |
| spack compiler find | grep gcc@${{ matrix.gcc_ver }} | |
| spack external find gmake cmake git git-lfs perl python ${{ matrix.mpi }} | |
| spack config add "packages:all:require:['%gcc@${{ matrix.gcc_ver }}']" | |
| spack config add "packages:mpi:require:'${{ matrix.mpi }}'" | |
| spack concretize |& tee ${SPACK_ENV}/log.concretize | |
| spack install -j2 --fail-fast | |
| echo "spackrc=$?" >> ${GITHUB_ENV} | |
| spack clean --all | |
| build_fv3atm: | |
| needs: build_spack | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| cmake_opts: ["-D32BIT=ON", "-D32BIT=OFF"] | |
| gcc_ver: ["12"] | |
| mpi: ["mpich", "openmpi"] | |
| steps: | |
| # Only do Doxygen and gcovr build for one job | |
| - name: decide-doc-gcovr-build | |
| run: | | |
| if [[ "${{ matrix.cmake_opts }}" == "-D32BIT=ON" && "${{ matrix.gcc_ver }}" == 12 && "${{ matrix.mpi }}" == mpich ]]; then | |
| echo 'devbuild=ON' | tee -a ${GITHUB_ENV} | |
| echo 'gcov_cmake="-DCMAKE_Fortran_FLAGS=-fprofile-abs-path -fprofile-arcs -ftest-coverage -O0"' | tee -a ${GITHUB_ENV} | |
| else | |
| echo 'devbuild=OFF' | tee -a ${GITHUB_ENV} | |
| fi | |
| - name: install-utilities | |
| run: | | |
| sudo apt-get install doxygen graphviz | |
| python3 -m pip install gcovr | |
| - name: install-cmake | |
| run: | | |
| cd ${{ github.workspace }} | |
| curl -f -s -S -R -L https://github.com/Kitware/CMake/releases/download/v3.29.2/cmake-3.29.2-Linux-x86_64.tar.gz | tar -zx | |
| echo "${{ github.workspace }}/cmake-3.29.2-linux-x86_64/bin" >> $GITHUB_PATH | |
| - name: checkout-fv3atm | |
| uses: actions/checkout@v4 | |
| with: | |
| path: ${{ github.workspace }}/fv3atm | |
| submodules: recursive | |
| - name: cache-spack | |
| id: cache-spack | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: ${{ github.workspace }}/spack-develop | |
| key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }} | |
| - name: build-fv3atm | |
| run: | | |
| . ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
| spack env activate gcc${{ matrix.gcc_ver }} | |
| spack load $(spack find --format "{name}") | |
| cd ${GITHUB_WORKSPACE}/fv3atm | |
| git clone https://github.com/NOAA-EMC/CMakeModules | |
| git clone --recurse-submodules https://github.com/NOAA-PSL/stochastic_physics stochastic_physics_repo | |
| mkdir ${GITHUB_WORKSPACE}/build | |
| cd ${GITHUB_WORKSPACE}/build | |
| export CC=mpicc | |
| export CXX=mpicxx | |
| export FC=mpif90 | |
| cmake ${GITHUB_WORKSPACE}/fv3atm -DBUILD_TESTING=ON ${{ matrix.cmake_opts }} -DENABLE_DOCS=ON ${{ env.gcov_cmake }} | |
| make -j2 | |
| - name: run-tests | |
| run: | | |
| cd $GITHUB_WORKSPACE/build | |
| ctest -j2 --output-on-failure --rerun-failed | |
| - name: get-test-coverage | |
| if: ${{ env.devbuild == 'ON' }} | |
| run: | | |
| cd $GITHUB_WORKSPACE/build | |
| gcovr -r .. -v --html-details --gcov-executable gcov-12 --exclude $GITHUB_WORKSPACE/fv3atm/tests --exclude $GITHUB_WORKSPACE/fv3atm/stochastic_physics_repo --exclude $GITHUB_WORKSPACE/fv3atm/build/ccpp --exclude $GITHUB_WORKSPACE/fv3atm/ccpp/physics --exclude $GITHUB_WORKSPACE/fv3atm/ccpp/framework --exclude $GITHUB_WORKSPACE/fv3atm/atmos_cubed_sphere --exclude CMakeFiles --print-summary -o test-coverage.html | |
| - name: upload-test-coverage | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ env.devbuild == 'ON' }} | |
| with: | |
| name: test-coverage-fv3atm-${{ github.sha }} | |
| path: | | |
| ${{ github.workspace }}/build/*.html | |
| ${{ github.workspace }}/build/*.css | |
| - name: upload-docs | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ env.devbuild == 'ON' }} | |
| with: | |
| name: docs-fv3atm | |
| path: | | |
| build/docs/html | |
| - name: debug-artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ failure() }} | |
| with: | |
| name: ccpp_prebuild_logs-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }}-${{ matrix.cmake_opts }} | |
| path: ${{ github.workspace }}/build/ccpp/ccpp_prebuild.* |