Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Diag field type #1017

Merged
merged 11 commits into from
Aug 15, 2022
Merged

Diag field type #1017

Show file tree
Hide file tree
Changes from 6 commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
49eda2e
Creates the fmsDiagField_type
thomas-robinson Aug 9, 2022
8f480ba
Adds licesne
thomas-robinson Aug 9, 2022
1a705f6
Adds inits for object, file and field
thomas-robinson Aug 10, 2022
412f0b3
Fixes all dependencies for fms_diag_object.
thomas-robinson Aug 11, 2022
7c2d3dc
Adds initialized check to diag yaml
thomas-robinson Aug 11, 2022
b74b210
Attempts to point to the diagFile to the diagYaml
thomas-robinson Aug 11, 2022
aa1ef94
Fixes yaml ifdefs to compile without yaml
thomas-robinson Aug 12, 2022
900a0e0
Fixes a pointer error in the diag oibject
thomas-robinson Aug 12, 2022
b87088c
Fixes a check for to make sure the diag id is valid
thomas-robinson Aug 12, 2022
13211c0
Resolves comments in #1017
thomas-robinson Aug 15, 2022
a606f4f
removes output_units and t from field object
thomas-robinson Aug 15, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CMakeLists.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -127,6 +127,7 @@ list(APPEND fms_fortran_src_files
diag_manager/fms_diag_object.F90
diag_manager/fms_diag_yaml.F90
diag_manager/fms_diag_file_object.F90
diag_manager/fms_diag_field_object.F90
diag_manager/fms_diag_axis_object.F90
diag_manager/fms_diag_dlinked_list.F90
diag_manager/fms_diag_object_container.F90
Expand Down
8 changes: 6 additions & 2 deletions diag_manager/Makefile.am
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -39,6 +39,7 @@ libdiag_manager_la_SOURCES = \
diag_table.F90 \
diag_util.F90 \
fms_diag_file_object.F90 \
fms_diag_field_object.F90 \
fms_diag_yaml.F90 \
fms_diag_object.F90 \
fms_diag_axis_object.F90 \
Expand All @@ -52,9 +53,11 @@ diag_util_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_axis_mod.$(FC_MODEXT
diag_grid_mod.$(FC_MODEXT)
diag_table_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_util_mod.$(FC_MODEXT)
fms_diag_yaml_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_util_mod.$(FC_MODEXT)
fms_diag_object_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_axis_mod.$(FC_MODEXT) fms_diag_file_object_mod.$(FC_MODEXT) fms_diag_yaml_mod.$(FC_MODEXT) \
fms_diag_object_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_axis_mod.$(FC_MODEXT) fms_diag_file_object_mod.$(FC_MODEXT) fms_diag_field_object_mod.$(FC_MODEXT) fms_diag_yaml_mod.$(FC_MODEXT) \
diag_util_mod.$(FC_MODEXT)
fms_diag_file_object_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_axis_mod.$(FC_MODEXT) fms_diag_yaml_mod.$(FC_MODEXT)
fms_diag_field_object_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_axis_mod.$(FC_MODEXT) fms_diag_yaml_mod.$(FC_MODEXT) \
diag_util_mod.$(FC_MODEXT)
fms_diag_file_object_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT) diag_axis_mod.$(FC_MODEXT) fms_diag_yaml_mod.$(FC_MODEXT) fms_diag_field_object_mod.$(FC_MODEXT)
fms_diag_object_container_mod.$(FC_MODEXT): fms_diag_object_mod.$(FC_MODEXT) fms_diag_dlinked_list_mod.$(FC_MODEXT)
fms_diag_axis_object_mod.$(FC_MODEXT): diag_data_mod.$(FC_MODEXT)
diag_manager_mod.$(FC_MODEXT): diag_axis_mod.$(FC_MODEXT) diag_data_mod.$(FC_MODEXT) diag_util_mod.$(FC_MODEXT) \
Expand All @@ -73,6 +76,7 @@ MODFILES = \
diag_table_mod.$(FC_MODEXT) \
fms_diag_yaml_mod.$(FC_MODEXT) \
fms_diag_file_object_mod.$(FC_MODEXT) \
fms_diag_field_object_mod.$(FC_MODEXT) \
fms_diag_object_mod.$(FC_MODEXT) \
fms_diag_axis_object_mod.$(FC_MODEXT) \
fms_diag_dlinked_list_mod.$(FC_MODEXT) \
Expand Down
36 changes: 16 additions & 20 deletions diag_manager/diag_manager.F90
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -236,14 +236,10 @@ MODULE diag_manager_mod
USE diag_table_mod, ONLY: parse_diag_table
USE diag_output_mod, ONLY: get_diag_global_att, set_diag_global_att
USE diag_grid_mod, ONLY: diag_grid_init, diag_grid_end
USE fms_diag_object_mod, ONLY: fmsDiagObject_type, fms_diag_object_init, fms_register_diag_field_array, &
& fms_register_diag_field_scalar, fms_diag_object_end, fms_register_static_field, fms_diag_field_add_attribute, &
& fms_get_diag_field_id
USE fms_diag_file_object_mod, only: fms_diag_files_object_initialized
#ifdef use_yaml
use fms_diag_yaml_mod, only: diag_yaml_object_init, diag_yaml_object_end, get_num_unique_fields, find_diag_field
use fms_diag_axis_object_mod, only: fms_diag_axis_object_end, fms_diag_axis_object_init
use fms_diag_file_object_mod, only: fms_diag_files_object_init
use fms_diag_object_mod, only:fms_diag_object
#endif

USE constants_mod, ONLY: SECONDS_PER_DAY
Expand Down Expand Up @@ -407,8 +403,9 @@ INTEGER FUNCTION register_diag_field_scalar(module_name, field_name, init_time,
END IF
END IF
if (use_modern_diag) then
register_diag_field_scalar = fms_register_diag_field_scalar(module_name, field_name, init_time, &
& long_name=long_name, units=units, missing_value=missing_value, var_range=range, standard_name=standard_name, &
register_diag_field_scalar = fms_diag_object%fms_register_diag_field_scalar( &
& module_name, field_name, init_time, long_name=long_name, units=units, &
& missing_value=missing_value, var_range=range, standard_name=standard_name, &
& do_not_log=do_not_log, err_msg=err_msg, area=area, volume=volume, realm=realm)
else
register_diag_field_scalar = register_diag_field_scalar_old(module_name, field_name, init_time, &
Expand Down Expand Up @@ -445,8 +442,9 @@ INTEGER FUNCTION register_diag_field_array(module_name, field_name, axes, init_t
CHARACTER(len=*), OPTIONAL, INTENT(in) :: realm !< String to set as the modeling_realm attribute

if (use_modern_diag) then
register_diag_field_array = fms_register_diag_field_array(module_name, field_name, axes, init_time, &
& long_name=long_name, units=units, missing_value=missing_value, var_range=range, mask_variant=mask_variant, &
register_diag_field_array = fms_diag_object%fms_register_diag_field_array( &
& module_name, field_name, axes, init_time, long_name=long_name, &
& units=units, missing_value=missing_value, var_range=range, mask_variant=mask_variant, &
& standard_name=standard_name, verbose=verbose, do_not_log=do_not_log, err_msg=err_msg, &
& interp_method=interp_method, tile_count=tile_count, area=area, volume=volume, realm=realm)
else
Expand Down Expand Up @@ -493,7 +491,7 @@ INTEGER FUNCTION register_static_field(module_name, field_name, axes, long_name,
END IF

if (use_modern_diag) then
register_static_field = fms_register_static_field(module_name, field_name, axes, &
register_static_field = fms_diag_object%fms_register_static_field(module_name, field_name, axes, &
& long_name=long_name, units=units, missing_value=missing_value, range=range, mask_variant=mask_variant, &
& standard_name=standard_name, dynamic=DYNAMIC, do_not_log=do_not_log, interp_method=interp_method,&
& tile_count=tile_count, area=area, volume=volume, realm=realm)
Expand Down Expand Up @@ -1228,7 +1226,7 @@ INTEGER FUNCTION get_diag_field_id(module_name, field_name)

get_diag_field_id = DIAG_FIELD_NOT_FOUND
if (use_modern_diag) then
get_diag_field_id = fms_get_diag_field_id(module_name, field_name)
get_diag_field_id = fms_diag_object%fms_get_diag_field_id_from_name(module_name, field_name)
else
! find_input_field will return DIAG_FIELD_NOT_FOUND if the field is not
! included in the diag_table
Expand Down Expand Up @@ -3704,7 +3702,7 @@ SUBROUTINE diag_manager_end(time)
if (use_modern_diag) then
call diag_yaml_object_end
call fms_diag_axis_object_end()
call fms_diag_object_end()
call fms_diag_object%diag_end()
endif
#endif
END SUBROUTINE diag_manager_end
Expand Down Expand Up @@ -3922,9 +3920,7 @@ SUBROUTINE diag_manager_init(diag_model_subset, time_init, err_msg)
if (use_modern_diag) then
CALL diag_yaml_object_init(diag_subset_output)
CALL fms_diag_axis_object_init()
CALL fms_diag_object_init(255, 255) !< TO DO: MAX_LEN_VARNAME and MAX_LEN_META are supposed to be read from
!! the namelist and sent to fms_diag_object
fms_diag_files_object_initialized = fms_diag_files_object_init ()
CALL fms_diag_object%init(diag_subset_output)
Comment on lines 3921 to +3923
Copy link
Contributor

@uramirez8707 uramirez8707 Aug 11, 2022 •
edited
Loading

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This initializes the yaml twice. Once in L3921 and then inside CALL fms_diag_object%init(diag_subset_output)
call diag_yaml_object_init(diag_subset_output) needs to be remove

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

A module initialized was added to the yaml module so that it doesn';t crash. The code needs to be rearranged so that the diag object handles the inialization of the yaml and the axis objects.

endif
#else
if (use_modern_diag) &
Expand Down Expand Up @@ -4220,7 +4216,7 @@ SUBROUTINE diag_field_add_attribute_scalar_r(diag_field_id, att_name, att_value)
REAL, INTENT(in) :: att_value !< new attribute value

if (use_modern_diag) then
call fms_diag_field_add_attribute(diag_field_id, att_name, (/att_value /))
call fms_diag_object%fms_diag_field_add_attribute(diag_field_id, att_name, (/att_value /))
else
CALL diag_field_add_attribute_r1d(diag_field_id, att_name, (/ att_value /))
endif
Expand All @@ -4233,7 +4229,7 @@ SUBROUTINE diag_field_add_attribute_scalar_i(diag_field_id, att_name, att_value)
INTEGER, INTENT(in) :: att_value !< new attribute value

if (use_modern_diag) then
call fms_diag_field_add_attribute(diag_field_id, att_name, (/att_value /))
call fms_diag_object%fms_diag_field_add_attribute(diag_field_id, att_name, (/att_value /))
else
CALL diag_field_add_attribute_i1d(diag_field_id, att_name, (/ att_value /))
endif
Expand All @@ -4246,7 +4242,7 @@ SUBROUTINE diag_field_add_attribute_scalar_c(diag_field_id, att_name, att_value)
CHARACTER(len=*), INTENT(in) :: att_value !< new attribute value

if (use_modern_diag) then
call fms_diag_field_add_attribute(diag_field_id, att_name, (/att_value /))
call fms_diag_object%fms_diag_field_add_attribute(diag_field_id, att_name, (/att_value /))
else
CALL diag_field_attribute_init(diag_field_id, att_name, NF90_CHAR, cval=att_value)
endif
Expand All @@ -4259,7 +4255,7 @@ SUBROUTINE diag_field_add_attribute_r1d(diag_field_id, att_name, att_value)
REAL, DIMENSION(:), INTENT(in) :: att_value !< new attribute value

if (use_modern_diag) then
call fms_diag_field_add_attribute(diag_field_id, att_name, att_value)
call fms_diag_object%fms_diag_field_add_attribute(diag_field_id, att_name, att_value)
else
CALL diag_field_attribute_init(diag_field_id, att_name, NF90_FLOAT, rval=att_value)
endif
Expand All @@ -4272,7 +4268,7 @@ SUBROUTINE diag_field_add_attribute_i1d(diag_field_id, att_name, att_value)
INTEGER, DIMENSION(:), INTENT(in) :: att_value !< new attribute value

if (use_modern_diag) then
call fms_diag_field_add_attribute(diag_field_id, att_name, att_value)
call fms_diag_object%fms_diag_field_add_attribute(diag_field_id, att_name, att_value)
else
CALL diag_field_attribute_init(diag_field_id, att_name, NF90_INT, ival=att_value)
endif
Expand Down
Loading