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Abstraction of run_bigscape function #115

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CunliangGeng opened this issue Feb 23, 2023 · 1 comment

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refactor codebase

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CunliangGeng commented Feb 23, 2023 •

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Refactor run_bigscape function:

explore if it is necessary to refactor the function to a class that follows a base class Runner (non exist yet)
Since the download and run logics should be independent, we should move run_bigscape out of PODPDownloader to an higher level, for example to the loader.py module.
- Right now run_biscape is defined in pairedomics/runbigscape.py, and it's used in podp_run_bigscape, called in pairedomics/downloader.py.

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CunliangGeng added the GEN label

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Refactor DatasetLoader class #145

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CunliangGeng self-assigned this

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CunliangGeng commented Jul 17, 2024

We will keep it as it is.

CunliangGeng closed this as completed

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