Update Qualification and Profiling tool documentation for gh-pages #3294
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Closes #3284
Update Qualification and Profiling tool documentation to improve formatting on gh-pages.
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after numbering so jekyll recognizes the numeric list (lines 644-657)I am unsure why "B. Analysis" is repeated on lines 689 and 699. Some clarity from @viadea would help.
Once this is merged the gh-pages docs need to be updated with this change.