update production

NeotomaDB · Jul 23, 2024 · 110b3e3 · 110b3e3
1 parent fb72cec
commit 110b3e3
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,16 +1,16 @@
 Package: neotoma2
 Title: Working with the Neotoma Paleoecology Database
-Date: 2023-08-16
-Version: 1.0.3
+Date: 2024-07-23
+Version: 1.0.4
 Authors@R:
     c(person(given = "Dominguez Vidana",
              family = "Socorro",
-             role = c("aut"),
+             role = c("aut", "cre"),
              email = "s.dominguez@ht-data.com",
              comment = structure("0000-0002-7926-4935", .Names = "ORCID")),
       person(given = "Simon",
              family = "Goring",
-             role = c("aut", "cre"),
+             role = c("aut"),
              email = "goring@wisc.edu",
              comment = structure("0000-0002-2700-4605", .Names = "ORCID")))
 URL: https://github.com/NeotomaDB/neotoma2
@@ -42,11 +42,11 @@ Imports:
     dplyr,
     gtools,
     leaflet,
-    mapview,
     assertthat,
     stringr,
     progress,
     wk,
     uuid,
     tidyr
-VignetteBuilder: knitr
+VignetteBuilder: 
+    knitr
diff --git a/NEWS.md b/NEWS.md
@@ -5,4 +5,24 @@
 
 # neotoma2 1.0.3
 
-Added JOSS Article PDF and vignette under inst/doc
+## Remarks for Upgrade 1.0.3
+
+Fixed errors in the API calls.
+
+Fixed filter function for collection units and datasets. Changed \itemize for \describe
+
+Updated plotLeaflet to not add provider tiles.
+
+Removed mapview to avoid `sp` conflicts.
+
+Updated README to reflect milestones with JOSS.
+
+Updated maintainer.
+
+# neotoma2 1.0.4
+
+## Remarks for Upgrade 1.0.4
+
+Fixed errors in the API calls.
+
+Updated README.
diff --git a/README.md b/README.md
@@ -74,8 +74,8 @@ The `neotoma2` R package pulls data from the [Neotoma Paleoecology Database](htt
 
 This project is to be evaluated using the following metrics:
 
-* Updated production Branch with CRAN changes, May 24, 2024; only code affected.
-* Maintenance Github 1.0.3 release, February 28, 2024
+* Maintenance Github 1.0.4 release, **DONE** July 23, 2024
+* Maintenance Github 1.0.3 release, **DONE** February 28, 2024
 * Published JOSS paper, **DONE** 28 November, 2023
 * Submitted paper to JOSS **DONE** 03 May, 2023
 * Completion CRAN 1.0.0 release **DONE** April 23, 2023

diff --git a/cran-comments.md b/cran-comments.md
@@ -174,4 +174,25 @@ I hope this is correct now, otherwise, please give me some more references/examp
 
 ## Remarks for Upgrade 1.0.3
 
-Added JOSS Article PDF and fixed small errors in the API calls.
+Fixed errors in the API calls.
+
+Fixed filter function for collection units and datasets. Fixed filter function documentation.
+
+Updated plotLeaflet to not add provider tiles.
+
+Removed mapview to avoid `sp` conflicts.
+
+Updated README to reflect milestones with JOSS.
+
+New maintainer:
+  Dominguez Vidana Socorro <s.dominguez@ht-data.com>
+Old maintainer(s):
+  Simon Goring <goring@wisc.edu>
+
+-----
+
+## Remarks for Upgrade 1.0.4
+
+Fixed errors in the API calls as per CRAN policies.
+
+Fixed filter function for collection units and datasets. 
diff --git a/man/plot-sites-method.Rd b/man/plot-sites-method.Rd
diff --git a/man/sub-collunits-numeric-method.Rd b/man/sub-collunits-numeric-method.Rd
diff --git a/man/sub-datasets-numeric-method.Rd b/man/sub-datasets-numeric-method.Rd
diff --git a/man/sub-site-character-method.Rd b/man/sub-site-character-method.Rd
diff --git a/man/sub-site-numeric-method.Rd b/man/sub-site-numeric-method.Rd
diff --git a/man/sub-sites-numeric-method.Rd b/man/sub-sites-numeric-method.Rd
diff --git a/man/sub-specimens-numeric-method.Rd b/man/sub-specimens-numeric-method.Rd
diff --git a/man/sub-sub-chronologies-numeric-method.Rd b/man/sub-sub-chronologies-numeric-method.Rd
diff --git a/man/sub-sub-collunits-numeric-method.Rd b/man/sub-sub-collunits-numeric-method.Rd
diff --git a/man/sub-sub-contacts-numeric-method.Rd b/man/sub-sub-contacts-numeric-method.Rd
diff --git a/man/sub-sub-datasets-numeric-method.Rd b/man/sub-sub-datasets-numeric-method.Rd
diff --git a/man/sub-sub-publications-numeric-method.Rd b/man/sub-sub-publications-numeric-method.Rd
diff --git a/man/sub-sub-samples-numeric-method.Rd b/man/sub-sub-samples-numeric-method.Rd
diff --git a/man/sub-sub-sites-numeric-method.Rd b/man/sub-sub-sites-numeric-method.Rd