Merge pull request #1558 from zm711/fix-intan-one-channel-per-signal

IntanRawIO: Fix memmap order for Intan one-file-per-stream
NeuralEnsemble · Sep 23, 2024 · 0f6c9a0 · 0f6c9a0
2 parents eaa6903 + d739a10
commit 0f6c9a0
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/neo/rawio/intanrawio.py b/neo/rawio/intanrawio.py
@@ -179,6 +179,7 @@ def _parse_header(self):
             self._raw_data = np.memmap(self.filename, dtype=memmap_data_dtype, mode="r", offset=header_size)
 
         # for 'one-file-per-signal' we have one memory map / neo stream
+        # based on https://github.com/NeuralEnsemble/python-neo/issues/1556 bug in versions 0.13.1, .2, .3
         elif self.file_format == "one-file-per-signal":
             self._raw_data = {}
             for stream_index, (stream_index_key, stream_datatype) in enumerate(memmap_data_dtype.items()):
@@ -188,8 +189,8 @@ def _parse_header(self):
                 dtype_size = np.dtype(stream_datatype).itemsize
                 n_samples = size_in_bytes // (dtype_size * num_channels)
                 signal_stream_memmap = np.memmap(
-                    file_path, dtype=stream_datatype, mode="r", shape=(num_channels, n_samples)
-                ).T
+                    file_path, dtype=stream_datatype, mode="r", shape=(n_samples, num_channels), order='C',
+                )
                 self._raw_data[stream_index] = signal_stream_memmap
 
         # for one-file-per-channel we have one memory map / channel stored as a list / neo stream