Snakemake workflow: snakemake_guppy_basecall

This workflow performs basecalling using GUPPY in GPU mode with a given input PROJECT directory of fast5 files.

Authors

• Hans Vasquez-Gross (@hans-vg)

Usage

Simple

Step 1: Install workflow

clone this workflow to your local computer

Step 2: Configure workflow

Configure the workflow according to your needs by editing the config.yaml to configure your input basespace PROJECT directory.

Step 3: Execute workflow

Test your configuration by performing a dry-run via

snakemake --use-conda -n