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JGradone authored Jun 3, 2024
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95 changes: 95 additions & 0 deletions .github/workflows/build_book.yml
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name: deploy-site

# Only run this when the main branch changes
on:
push:
branches:
- main
pull_request:
workflow_dispatch:
release:

# This job installs dependencies, builds the book, and pushes it to `gh-pages`
jobs:
build:
runs-on: ubuntu-latest
if: github.repository == 'OceanGlidersCommunity/Oxygen_SOP'
defaults:
run:
shell: bash -l {0}
steps:
- name: Cancel previous runs
uses: styfle/cancel-workflow-action@0.9.1
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3

# Install dependencies
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.9

- name: Install dependencies
run: |
pip install -r requirements.txt
# Build the book
- name: Build the book
run: |
jupyter-book build .
# Zip the site (so it can be handed to the preview action)
- name: Zip the site
run: |
set -x
set -e
if [ -f site.zip ]; then
rm -rf site.zip
fi
zip -r site.zip ./_build/html
- uses: actions/upload-artifact@v3
with:
name: site-zip
path: ./site.zip

# Push the site's HTML to github-pages (only if on main, previews are sent to netlify)
- name: Deploy to GitHub pages
if: github.ref == 'refs/heads/main'
uses: peaceiris/actions-gh-pages@v3.8.0
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: ./_build/html
enable_jekyll: false
build_pdf:
runs-on: ubuntu-latest
if: github.event_name == 'release'
needs: build
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.9

- name: Install dependencies
run: |
pip install -r requirements.txt
- name: Install Tex
run: |
sudo apt-get install texlive-latex-recommended texlive-latex-extra \
texlive-fonts-recommended texlive-fonts-extra \
texlive-xetex latexmk
- name: Build the book as pdf #This needs to happen after the site is zipped, since this builds different html that we dont want on the website
run: |
jupyter-book build . --builder pdflatex
- uses: actions/upload-artifact@v3
with:
name: book-pdf
path: _build/latex/python.pdf
129 changes: 129 additions & 0 deletions .github/workflows/preview-book.yml
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name: preview-site
on:
workflow_run:
workflows:
- deploy-site
types:
- requested
- completed
jobs:
deploy:
runs-on: ubuntu-latest
defaults:
run:
shell: bash
steps:
- uses: actions/checkout@v2
- name: Set message value
run: |
echo "comment_message=This pull request is being automatically built with [GitHub Actions](https://github.com/features/actions) and [Netlify](https://www.netlify.com/). To see the status of your deployment, click below." >> $GITHUB_ENV
- name: Find Pull Request
uses: actions/github-script@v4
id: find-pull-request
with:
script: |
let pullRequestNumber = ''
let pullRequestHeadSHA = ''
core.info('Finding pull request...')
const pullRequests = await github.pulls.list({owner: context.repo.owner, repo: context.repo.repo})
for (let pullRequest of pullRequests.data) {
if(pullRequest.head.sha === context.payload.workflow_run.head_commit.id) {
pullRequestHeadSHA = pullRequest.head.sha
pullRequestNumber = pullRequest.number
break
}
}
core.setOutput('number', pullRequestNumber)
core.setOutput('sha', pullRequestHeadSHA)
if(pullRequestNumber === '') {
core.info(
`No pull request associated with git commit SHA: ${context.payload.workflow_run.head_commit.id}`
)
}
else{
core.info(`Found pull request ${pullRequestNumber}, with head sha: ${pullRequestHeadSHA}`)
}
- name: Find Comment
uses: peter-evans/find-comment@v1
if: steps.find-pull-request.outputs.number != ''
id: fc
with:
issue-number: '${{ steps.find-pull-request.outputs.number }}'
comment-author: 'github-actions[bot]'
body-includes: '${{ env.comment_message }}'
- name: Create comment
if: |
github.event.workflow_run.conclusion != 'success'
&& steps.find-pull-request.outputs.number != ''
&& steps.fc.outputs.comment-id == ''
uses: peter-evans/create-or-update-comment@v1
with:
issue-number: ${{ steps.find-pull-request.outputs.number }}
body: |
${{ env.comment_message }}
🚧 Deployment in progress for git commit SHA: ${{ steps.find-pull-request.outputs.sha }}
- name: Update comment
if: |
github.event.workflow_run.conclusion != 'success'
&& steps.find-pull-request.outputs.number != ''
&& steps.fc.outputs.comment-id != ''
uses: peter-evans/create-or-update-comment@v1
with:
comment-id: ${{ steps.fc.outputs.comment-id }}
edit-mode: replace
body: |
${{ env.comment_message }}
🚧 Deployment in progress for git commit SHA: ${{ steps.find-pull-request.outputs.sha }}
- name: Download Artifact site
if: |
github.event.workflow_run.conclusion == 'success'
&& steps.find-pull-request.outputs.number != ''
&& steps.fc.outputs.comment-id != ''
uses: dawidd6/action-download-artifact@v2.14.1
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
workflow: deploy.yaml
run_id: ${{ github.event.workflow_run.id }}
name: site-zip
- name: Unzip site
if: |
github.event.workflow_run.conclusion == 'success'
&& steps.find-pull-request.outputs.number != ''
&& steps.fc.outputs.comment-id != ''
run: |
rm -rf _build/html
unzip site.zip
rm -f site.zip
# Push the site's HTML to Netlify and get the preview URL
- name: Deploy to Netlify
if: |
github.event.workflow_run.conclusion == 'success'
&& steps.find-pull-request.outputs.number != ''
&& steps.fc.outputs.comment-id != ''
id: netlify
uses: nwtgck/actions-netlify@v1.2
with:
publish-dir: _build/html
production-deploy: false
github-token: ${{ secrets.GITHUB_TOKEN }}
enable-commit-comment: false
env:
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
timeout-minutes: 5
- name: Update site Preview comment
if: |
github.event.workflow_run.conclusion == 'success'
&& steps.find-pull-request.outputs.number != ''
&& steps.fc.outputs.comment-id != ''
uses: peter-evans/create-or-update-comment@v1
with:
comment-id: ${{ steps.fc.outputs.comment-id }}
edit-mode: replace
body: |
${{ env.comment_message }}
🔍 Git commit SHA: ${{ steps.find-pull-request.outputs.sha }}
✅ Deployment Preview URL: ${{ steps.netlify.outputs.deploy-url }}
2 changes: 2 additions & 0 deletions .gitignore
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_build
__pycache__
156 changes: 156 additions & 0 deletions CODE_OF_CONDUCT.md
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# Contributor Covenant Code of Conduct

## Our Pledge

We as members, contributors, and leaders pledge to make participation in our
community a harassment-free experience for everyone, regardless of age, body
size, visible or invisible disability, ethnicity, sex characteristics, gender
identity and expression, level of experience, education, socio-economic status,
nationality, personal appearance, race, religion, sexual identity and
orientation, or other similar characteristics.

We pledge to act and interact in ways that contribute to an open, friendly,
safe, welcoming, diverse, inclusive, and healthy community.

## Our Standards

- Please avoid using overtly sexual aliases or other nicknames that might detract from a friendly, safe and welcoming environment for all.
- Please be kind and courteous. There’s no need to be mean or rude.
- Respect that people have differences of opinion and that every design or implementation choice carries a trade-off and numerous costs. There is seldom a right answer.
- Please keep unstructured critique to a minimum. If you have solid ideas you want to experiment with, make a fork and see how it works.
- We will exclude you from interaction if you insult, demean or harass anyone. That is not welcome behavior. We interpret the term “harassment” as including the definition in the Citizen Code of Conduct; if you have any lack of clarity about what might be included in that concept, please read [below](#harassment). In particular, we don’t tolerate behavior that excludes people in socially marginalized groups.
- Private harassment is also unacceptable. No matter who you are, if you feel you have been or are being harassed or made uncomfortable by a community member, please contact any of the moderation team immediately. Whether you’re a regular contributor or a newcomer, we care about making this community a safe place for you and we’ve got your back.
- Likewise any spamming, trolling, flaming, baiting or other attention-stealing behavior is not welcome.

Examples of behavior that contributes to a positive environment for our
community includes:

- Demonstrating empathy and kindness toward other people
- Being respectful of differing opinions, viewpoints, and experiences
- Giving and gracefully accepting constructive feedback
- Accepting responsibility and apologizing to those affected by our mistakes,
and learning from the experience
- Focusing on what is best not just for us as individuals, but for the
overall community

Examples of unacceptable behavior include:

- The use of sexualized language or imagery, and sexual attention or
advances of any kind
- Trolling, insulting or derogatory comments, and personal, political, or religious attacks
- Public or private harassment
- Publishing others' private information, such as a physical or email
address, without their explicit permission
- Other conduct which could reasonably be considered inappropriate in a
professional setting

### Harassment

The following behaviors, defined in the [Citizen Code of Conduct](https://web.archive.org/web/20200330154000/http://citizencodeofconduct.org/), are considered harassment and are unacceptable within our community:

- Violence, threats of violence, or violent language directed against another person.
- Sexist, racist, homophobic, transphobic, ableist, or otherwise discriminatory jokes and language.
- Posting or displaying sexually explicit or violent material.
- Posting or threatening to post other people’s personally identifying information ("doxing").
- Personal insults, particularly those related to gender, sexual orientation, race, religion, or disability.
- Inappropriate photography or recording.
- Inappropriate physical contact. You should have someone’s consent before touching them.
- Unwelcome sexual attention. This includes sexualized comments or jokes; inappropriate touching, groping, and unwelcomed sexual advances.
- Deliberate intimidation, stalking or following (online or in-person).
- Advocating for, or encouraging, any of the above behavior.
- Sustained disruption of community events, including talks and presentations.

## Enforcement Responsibilities

Community leaders are responsible for clarifying and enforcing our standards of
acceptable behavior and will take appropriate and fair corrective action in
response to any behavior that they deem inappropriate, threatening, offensive,
or harmful.

Community leaders have the right and responsibility to remove, edit, or reject
comments, commits, code, wiki edits, issues, and other contributions that are
not aligned to this Code of Conduct, and will communicate reasons for moderation
decisions when appropriate.

## Scope

This Code of Conduct applies within all OceanGliders community spaces and also applies when
an individual is officially representing the community in public spaces.
Examples of representing our community include using an official e-mail address,
posting via an official social media account, or acting as an appointed
representative at an online or offline event.
To avoid confusion, the organizers of each activity should make it clear that it follows this code of conduct.

## Enforcement

Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported to the community leaders responsible for enforcement at
https://www.oceangliders.org/contact/.
All complaints will be reviewed and investigated promptly and fairly.

All community leaders are obligated to respect the privacy and security of the
reporter of any incident.

## Enforcement Guidelines

Community leaders will follow these Community Impact Guidelines in determining
the consequences for any action they deem in violation of this Code of Conduct:

### 1. Correction

**Community Impact**: Use of inappropriate language or other behavior deemed
unprofessional or unwelcome in the community.

**Consequence**: A private, written warning from community leaders, providing
clarity around the nature of the violation and an explanation of why the
behavior was inappropriate. A public apology may be requested.

### 2. Warning

**Community Impact**: A violation through a single incident or series
of actions.

**Consequence**: A warning with consequences for continued behavior. No
interaction with the people involved, including unsolicited interaction with
those enforcing the Code of Conduct, for a specified period of time. This
includes avoiding interactions in community spaces as well as external channels
like social media. Violating these terms may lead to a temporary or
permanent ban.

### 3. Temporary Ban

**Community Impact**: A serious violation of community standards, including
sustained inappropriate behavior.

**Consequence**: A temporary ban from any sort of interaction or public
communication with the community for a specified period of time. No public or
private interaction with the people involved, including unsolicited interaction
with those enforcing the Code of Conduct, is allowed during this period.
Violating these terms may lead to a permanent ban.

### 4. Permanent Ban

**Community Impact**: Demonstrating a pattern of violation of community
standards, including sustained inappropriate behavior, harassment of an
individual, or aggression toward or disparagement of classes of individuals.

**Consequence**: A permanent ban from any sort of public interaction within
the community.

## Attribution

This Code of Conduct is adapted from the [Contributor Covenant][homepage],
version 2.0, available at
https://www.contributor-covenant.org/version/2/0/code_of_conduct.html
together with [Rust's Code of Conduct][rust], and [Citizen Code of Conduct][citizencc].

Community Impact Guidelines were inspired by [Mozilla's code of conduct
enforcement ladder](https://github.com/mozilla/diversity).

[homepage]: https://www.contributor-covenant.org
[rust]: https://www.rust-lang.org/policies/code-of-conduct
[citizencc]: https://web.archive.org/web/20200330154000/http://citizencodeofconduct.org/

For answers to common questions about this code of conduct, see the FAQ at
https://www.contributor-covenant.org/faq. Translations are available at
https://www.contributor-covenant.org/translations.
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