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update dstg example script to use dance data, refactor dstg graph construct #103

Merged
merged 25 commits into from
Dec 31, 2022
Merged

update dstg example script to use dance data, refactor dstg graph construct #103

merged 25 commits into from
Dec 31, 2022

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RemyLau
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@RemyLau RemyLau commented Dec 31, 2022

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RemyLau added 25 commits December 26, 2022 16:31
@RemyLau
format fixes
a2962e0
@RemyLau
use double quote
e33d3db
@RemyLau
fix docstrings
c29c52a
@RemyLau
fix k_filter parameter
d2a9de6
@RemyLau
move dstg graph construct funct to dstg_graph
5f098d1
@RemyLau
check num graphs
723aef6
@RemyLau
use lower case function names
0693132
@RemyLau
improve clarity of reindexing
4dd4839
@RemyLau
remove unused label data as input to compute_dstg_adj
4daceac
@RemyLau
remove unused label data from adj_data
dda97a0
@RemyLau
pass split indexes instead of sliced df to compute_dstg_adj
eb069a9
@RemyLau
reduce construct_link graph to only take pseudo and real count matrices
c533eb7
@RemyLau
fix knn filter edge (Su-informatics-lab/DSTG#10)
e82d190
@RemyLau
clean up masked ce loss
51b6831
@RemyLau
use x instead of input, which is a python builtin function name
4432b40
@RemyLau
deprecated split, use all pseudo spots for training
66a17ad
@RemyLau
move preprocessing steps out of dstg model
f1bc429
@RemyLau
reduce k_filter for smaller datasets
ec2cbb5
@RemyLau
update dstg example script to use dance data obj, refactor DSTGraph
c310c6b
@RemyLau
implement and use get_split_mask to obtain train mask
794cdff
@RemyLau
clean up preprocess_adj and merge with normalize_adj
ad7b71b
@RemyLau
improve docstring, add warning comment
0342b63
@RemyLau
update bench test
7104a18
@RemyLau
use to_scipy_sparse_matrix insstead of adjacency_matrix
5984ed5
@RemyLau
minor fixes
047ca28
@RemyLau RemyLau merged commit 9966c47 into main Dec 31, 2022
@RemyLau RemyLau deleted the update-deconv branch December 31, 2022 03:26
@RemyLau RemyLau mentioned this pull request Dec 31, 2022
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@RemyLau