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refactor: DeepImput & GraphSCI imputation modules (dataset + transform) #223

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merged 26 commits into from
Feb 28, 2023

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@RemyLau RemyLau commented Feb 28, 2023

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@RemyLau RemyLau changed the title refactor: imputation module (dataset + transform + model) refactor: imputation module (dataset + transform) Feb 28, 2023
@RemyLau RemyLau changed the title refactor: imputation module (dataset + transform) refactor: DeepImput & GraphSCI imputation modules (dataset + transform) Feb 28, 2023
dance/datasets/singlemodality.py Outdated Show resolved Hide resolved
dance/datasets/singlemodality.py Show resolved Hide resolved
os.system("mkdir " + self.params.data_dir)
if not osp.exists(self.params.data_dir + "/train"):
os.system("mkdir " + self.params.data_dir + "/train")
if not osp.exists(self.data_dir):
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  • TODO later: use the download_unzip utility instead of doing these system calls.

dance/datasets/singlemodality.py Outdated Show resolved Hide resolved
dance/transforms/gene_holdout.py Outdated Show resolved Hide resolved
dance/transforms/gene_holdout.py Outdated Show resolved Hide resolved
@RemyLau RemyLau merged commit dc9d8b6 into main Feb 28, 2023
@RemyLau RemyLau deleted the imputation branch February 28, 2023 20:05
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2 participants