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Switch to using pip install. [ci skip]
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lohedges committed Aug 2, 2024
1 parent 8e477f7 commit c837b81
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8 changes: 4 additions & 4 deletions README.rst
Original file line number Diff line number Diff line change
Expand Up @@ -113,20 +113,20 @@ Conda environment.
git clone https://github.com/openbiosim/biosimspace
cd biosimspace/python
python setup.py install
pip install .
If you plan to develop and want an editable install, use:

.. code-block:: bash
python setup.py develop
pip install -e .
If you want to skip the installation of BioSimSpace dependencies, e.g. if they
are already installed, then you can use:

.. code-block:: bash
BSS_SKIP_DEPENDENCIES=1 python setup.py develop
BSS_SKIP_DEPENDENCIES=1 pip install -e .
Once finished, you can test the installation by running:

Expand All @@ -150,7 +150,7 @@ latest development code into that.
conda activate openbiosim-dev
git clone https://github.com/openbiosim/biosimspace
cd biosimspace/python
BSS_SKIP_DEPENDENCIES=1 python setup.py develop
BSS_SKIP_DEPENDENCIES=1 pip install -e .
(You may also want to install optional dependencies, such as ``ambertools`` and
``gromacs`` into your environment.)
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8 changes: 4 additions & 4 deletions doc/source/install.rst
Original file line number Diff line number Diff line change
Expand Up @@ -219,20 +219,20 @@ Conda environment.
git clone https://github.com/openbiosim/biosimspace
cd biosimspace/python
python setup.py install
pip install .
If you plan to develop and want an editable install, use:

.. code-block:: bash
python setup.py develop
pip install -e .
If you want to skip the installation of BioSimSpace dependencies, e.g. if they
are already installed, then you can use:

.. code-block:: bash
BSS_SKIP_DEPENDENCIES=1 python setup.py develop
BSS_SKIP_DEPENDENCIES=1 pip install -e .
Once finished, you can test the installation by running:

Expand All @@ -256,7 +256,7 @@ latest development code into that.
conda activate openbiosim-dev
git clone https://github.com/openbiosim/biosimspace
cd biosimspace/python
BSS_SKIP_DEPENDENCIES=1 python setup.py develop
BSS_SKIP_DEPENDENCIES=1 pip install -e .
(You may also want to install optional dependencies, such as ``ambertools`` and
``gromacs`` into your environment.)
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