[BUG] Cannot read the topology

[xiki-tempula]

Describe the bug
Cannot read the topology

To Reproduce

import BioSimSpace as BSS
BSS.IO.readMolecules(('Mcl1_vacuum.parm7', 'Mcl1_vacuum.rst7'))

Got

╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ /home/ubuntu/miniconda3/envs/BSSOrion/lib/python3.8/site-packages/BioSimSpace/IO/_io.py:453 in   │
│ readMolecules                                                                                    │
│                                                                                                  │
│    450 │                                                                                         │
│    451 │   # Try to read the files and return a molecular system.                                │
│    452 │   try:                                                                                  │
│ ❱  453 │   │   system = _patch_sire_load(                                                        │
│    454 │   │   │   files,                                                                        │
│    455 │   │   │   directory=str(download_dir),                                                  │
│    456 │   │   │   property_map=property_map,                                                    │
│                                                                                                  │
│ /home/ubuntu/miniconda3/envs/BSSOrion/lib/python3.8/site-packages/BioSimSpace/IO/_io.py:1078 in  │
│ _patch_sire_load                                                                                 │
│                                                                                                  │
│   1075 │                                                                                         │
│   1076 │   for i in range(0, len(paths)):                                                        │
│   1077 │   │   # resolve the paths, downloading as needed                                        │
│ ❱ 1078 │   │   p += _sire._load._resolve_path(paths[i], directory=directory, silent=silent)      │
│   1079 │                                                                                         │
│   1080 │   paths = p                                                                             │
│   1081                                                                                           │
│                                                                                                  │
│ /home/ubuntu/miniconda3/envs/BSSOrion/lib/python3.8/site-packages/sire/_load.py:116 in           │
│ _resolve_path                                                                                    │
│                                                                                                  │
│   113 │   if hasattr(directory, "strpath"):                                                      │
│   114 │   │   directory = directory.strpath                                                      │
│   115 │                                                                                          │
│ ❱ 116 │   if os.path.exists(path) and os.path.isfile(path):                                      │
│   117 │   │   if path.endswith(".gz"):                                                           │
│   118 │   │   │   # unzip the file first                                                         │
│   119 │   │   │   unzipped = path[0:-3]                                                          │
│                                                                                                  │
│ /home/ubuntu/miniconda3/envs/BSSOrion/lib/python3.8/genericpath.py:19 in exists                  │
│                                                                                                  │
│    16 def exists(path):                                                                          │
│    17 │   """Test whether a path exists.  Returns False for broken symbolic links"""             │
│    18 │   try:                                                                                   │
│ ❱  19 │   │   os.stat(path)                                                                      │
│    20 │   except (OSError, ValueError):                                                          │
│    21 │   │   return False                                                                       │
│    22 │   return True                                                                            │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
TypeError: stat: path should be string, bytes, os.PathLike or integer, not tuple

During handling of the above exception, another exception occurred:

╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ in <module>:1                                                                                    │
│                                                                                                  │
│ /home/ubuntu/miniconda3/envs/BSSOrion/lib/python3.8/site-packages/BioSimSpace/IO/_io.py:504 in   │
│ readMolecules                                                                                    │
│                                                                                                  │
│    501 │   │   │   │   else:                                                                     │
│    502 │   │   │   │   │   raise IOError(msg) from None                                          │
│    503 │   │   │   else:                                                                         │
│ ❱  504 │   │   │   │   msg = "Failed to read molecules from: %s" % files                         │
│    505 │   │   │   │   if _isVerbose():                                                          │
│    506 │   │   │   │   │   raise IOError(msg) from e0                                            │
│    507 │   │   │   │   else:                                                                     │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
TypeError: not all arguments converted during string formatting

Expected behavior
Loads

Input files

Archive.zip

(please complete the following information):

• OS: Linux
• Version of Python: 3.8
• Version of BioSimSpace: main
• I confirm that I have checked this bug still exists in the latest released version of BioSimSpace: [yes/no]

Additional context
Add any other context about the problem here.

[lohedges]

Pass the files as a list, not a tuple. I can add something to convert it behind the scenes.

[xiki-tempula]

Weird, I only got this problem after I did the sync, maybe some other part failed upstream. I will have another check.

[xiki-tempula]

Ok, it is not even reproducible weird.