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Curation interface requirements gathering

Karen Cranston edited this page Sep 9, 2013 · 6 revisions

List of features required for data curation interface, divided into those already present in phylografter and those that are new.

Features already present in Phylografter

  1. Curating studies:
    1. Citation information: Users can enter citation information or enter a DOI and have citation information parsed from the DOI
    2. Import study from treebase: Users can import directly from TreeBASE by entering a TreeBASE ID or by uploading a NeXML file.
    3. Define ingroup/ focal clade visually
    4. interface for mapping tree labels to names in OTT
    5. Allow users to create an account / login in order to add or modify study data.
    6. labels: Allow curators to tag studies with free text labels
  2. Viewing / searching studies
    1. List all studies
    2. View uploaded trees
    3. Search studies by various metadata: this currently includes citation information, curator, year, date uploaded, focal clade, list of any / all OTUs

New features not present in Phylografter

  1. ability to delete a tree
  2. validation of uploaded files for compatibility with opentree data sharing requirements
  3. re-root trees visually
  4. write changes to nexson file store
  5. read files from nexson file store
  6. better connection to TNRS
  7. single sign-on with opentree webapp and other tools
  8. list status of studies w.r.t. incorporation in synthetic tree
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