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And reference the vignette on the pkgdown site.  ref #7
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wibeasley committed Sep 6, 2018
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Expand Up @@ -2,12 +2,12 @@ Package: codified
Title: Produce standard/formalized demographics tables
Description: Augment clinical data with metadata to create
output used in conventional publications and reports.
Version: 0.0.1.9001
Version: 0.1.1.9001
Date: 2018-08-27
Authors@R: c(person("Will", "Beasley", role = c("aut", "cre"), email =
"wibeasley@hotmail.com", comment = c(ORCID = "0000-0002-5613-5006")),
person("Peter", "Higgins", role = "ctb"))
URL: https://github.com/OuhscBbmc/codified, https://github.com/higgi13425/nih_enrollment_table
URL: https://ouhscbbmc.github.io/codified/, https://github.com/OuhscBbmc/codified, https://github.com/higgi13425/nih_enrollment_table
BugReports: https://github.com/OuhscBbmc/codified/issues
Depends:
R(>= 3.0.0),
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18 changes: 11 additions & 7 deletions README.md
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Expand Up @@ -4,24 +4,27 @@ Produce standard/formalized demographics tables

Clinical researchers often need to document and report the demographics of all consented subjects. A common use case is for reporting to funding agencies, including the National Institutes of Health (NIH). The NIH requires a particular format for the [PHS Inclusion Enrollment Report](https://grants.nih.gov/grants/how-to-apply-application-guide/forms-d/general/g.500-phs-inclusion-enrollment-report.htm) in each annual Research Performance Progress Report ([RPPR](https://grants.nih.gov/grants/rppr/index.htm)).

The <b>codified</b> package, in combination with the <b>REDCapR</b> package, provides a pipeline to directly extract the demographics of consented subjects from a REDCap database, and to rapidly and reproducibly produce standard demographics tables.
The <b>codified</b> package, in combination with the <b>REDCapR</b> package, provides a pipeline to directly extract the demographics of consented subjects from a REDCap database, and to rapidly and reproducibly produce standard demographics tables. This pipeline is demonstrated in the vignette, *[NIH Enrollment Tables in HTML
](https://ouhscbbmc.github.io/codified/articles/nih-enrollment-html.html)*.



### Installation and Documentation

In the future, the *release* version can be installed from [CRAN](https://cran.r-project.org/package=codified).
```r
# install.packages("codified")
```

The *development* version can be installed from [GitHub](https://github.com/OuhscBbmc/codified) after installing the `devtools` package.

```r
install.packages("devtools") # Run this line if the 'devtools' package isn't installed already.
devtools::install_github(repo="OuhscBbmc/codified")
```

In the future, the *release* version can be installed from [CRAN](https://cran.r-project.org/package=codified).
```r
# install.packages("codified") # Not yet on CRAN.
```

The package can be uninstalled from your local machine with `remove.packages("codified")`.


### Build Status and Package Characteristics

Expand All @@ -34,8 +37,9 @@ devtools::install_github(repo="OuhscBbmc/codified")
| Key | Value |
| :--- | :----- |
| [License](https://choosealicense.com/) | [![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT) |
| [Development Doc](https://www.rdocumentation.org/) | [![Rdoc](https://img.shields.io/badge/pkgodwn-GitHub.io-orange.svg?longCache=true&style=style=for-the-badge)](https://ouhscbbmc.github.io/codified/) |
<!--| [CRAN Version](https://cran.r-project.org/package=codified) | [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/codified)](https://cran.r-project.org/package=codified) |
| [CRAN Rate](http://cranlogs.r-pkg.org/) | ![CRANPace](http://cranlogs.r-pkg.org/badges/codified) |
| [Zenodo Archive](https://zenodo.org/search?ln=en&p=codified) | [![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.61990.svg)](https://doi.org/10.5281/zenodo.61990) |
| [Production Doc](https://www.rdocumentation.org/) | [![Rdoc](http://www.rdocumentation.org/badges/version/codified)](http://www.rdocumentation.org/packages/codified) |
| [Development Doc](https://www.rdocumentation.org/) | [![Rdoc](https://img.shields.io/badge/pkgodwn-GitHub.io-orange.svg?longCache=true&style=style=for-the-badge)](https://ouhscbbmc.github.io/codified/) |-->
-->

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