Fixing deprecations in scipy and numpy #2931
Merged
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This was originally started in a PR by @hpc-dave (#2923), but the github workflow for editing other people's PRs keeps eluding me. I pull the PR, did some additional edits, but can't seem to push to the same PR, so I am creating a new one. Hopefully @hpc-dave's contributions are still recognized by "the system".
Fixes #2922