Added header to all source files pointer to license file.

PNNL-CompBio · Feb 14, 2023 · 7f4918f · 7f4918f
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diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -1,3 +1,9 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
+
 cmake_minimum_required(VERSION 3.14)
 
 project(BMX-Exa

diff --git a/exec/CMakeLists.txt b/exec/CMakeLists.txt
@@ -1,3 +1,10 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be
+#     found
+#     in the LICENSE file in the top level directory of this distribution.
+#
+
 add_subdirectory(nlev_large_test)
 add_subdirectory(nlev_real_test)
 add_subdirectory(nlev_dla_test)
diff --git a/exec/GNUmakefile b/exec/GNUmakefile
@@ -1,3 +1,9 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
+
 # AMREX_HOME defines the directory in which we will find all the AMReX code
 AMREX_HOME ?= ../subprojects/amrex
 

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 add_library(bmxcore OBJECT)
 
 #

diff --git a/src/Make.package b/src/Make.package
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 CEXE_sources += main.cpp
 CEXE_sources += bmx.cpp
 CEXE_headers += bmx.H
diff --git a/src/bmx.H b/src/bmx.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #ifndef BMX_LEVEL_H_
 #define BMX_LEVEL_H_
 

diff --git a/src/bmx.cpp b/src/bmx.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx.H>
 
 #include <AMReX_BC_TYPES.H>

diff --git a/src/chemistry/CMakeLists.txt b/src/chemistry/CMakeLists.txt
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 target_include_directories( bmxcore
    PUBLIC
    $<BUILD_INTERFACE:${CMAKE_CURRENT_LIST_DIR}>)

diff --git a/src/chemistry/Make.package b/src/chemistry/Make.package
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 CEXE_headers += bmx_chem.H
 CEXE_headers += bmx_chem_K.H
 CEXE_headers += bmx_cell_interaction.H

diff --git a/src/chemistry/bmx_cell_interaction.H b/src/chemistry/bmx_cell_interaction.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #ifndef _BMX_CELL_INTERACTION_H_
 #define _BMX_CELL_INTERACTION_H_
 

diff --git a/src/chemistry/bmx_cell_interaction.cpp b/src/chemistry/bmx_cell_interaction.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <stdio.h>
 #include <math.h>
 #include <bmx.H>

diff --git a/src/chemistry/bmx_cell_interaction_K.H b/src/chemistry/bmx_cell_interaction_K.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <math.h>
 #include <bmx_fluid_parms.H>
 #include <bmx_cell_interaction.H>

diff --git a/src/chemistry/bmx_chem.H b/src/chemistry/bmx_chem.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #ifndef _BMX_CHEM_H_
 #define _BMX_CHEM_H_
 

diff --git a/src/chemistry/bmx_chem.cpp b/src/chemistry/bmx_chem.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <stdio.h>
 #include <bmx.H>
 #include <bmx_fluid_parms.H>

diff --git a/src/chemistry/bmx_chem_K.H b/src/chemistry/bmx_chem_K.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 /**
  * Check to see if particle meets criteria for splitting
  * @param p_par particle parameters

diff --git a/src/deposition/CMakeLists.txt b/src/deposition/CMakeLists.txt
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 target_include_directories(bmxcore
    PUBLIC
    $<BUILD_INTERFACE:${CMAKE_CURRENT_LIST_DIR}>)

diff --git a/src/deposition/Make.package b/src/deposition/Make.package
@@ -1,2 +1,7 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 CEXE_headers += bmx_deposition_K.H
 CEXE_sources += bmx_deposition_bcs.cpp
diff --git a/src/deposition/bmx_deposition_K.H b/src/deposition/bmx_deposition_K.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include "bmx_pc.H"
 #include <bmx.H>
 

diff --git a/src/deposition/bmx_deposition_bcs.cpp b/src/deposition/bmx_deposition_bcs.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx.H>
 
 void bmx::bmx_deposition_bcs (int lev, amrex::MultiFab& filled_mf)

diff --git a/src/des/CMakeLists.txt b/src/des/CMakeLists.txt
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 target_include_directories( bmxcore
    PUBLIC
    $<BUILD_INTERFACE:${CMAKE_CURRENT_LIST_DIR}>)

diff --git a/src/des/Make.package b/src/des/Make.package
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 CEXE_headers += bmx_des_K.H
 CEXE_headers += bmx_pc.H
 

diff --git a/src/des/bmx_calc_txfr.cpp b/src/des/bmx_calc_txfr.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx.H>
 #include <bmx_deposition_K.H>
 #include <bmx_interp_K.H>

diff --git a/src/des/bmx_calc_volume_fraction.cpp b/src/des/bmx_calc_volume_fraction.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx.H>
 #include <bmx_deposition_K.H>
 #include <bmx_fluid_parms.H>

diff --git a/src/des/bmx_des_K.H b/src/des/bmx_des_K.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include "bmx_pc.H"
 
 AMREX_GPU_HOST_DEVICE AMREX_INLINE

diff --git a/src/des/bmx_pc.H b/src/des/bmx_pc.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #ifndef _BMX_PC_H_
 #define _BMX_PC_H_
 

diff --git a/src/des/bmx_pc.cpp b/src/des/bmx_pc.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx_des_K.H>
 
 #include <bmx_dem_parms.H>

diff --git a/src/des/bmx_pc_init.cpp b/src/des/bmx_pc_init.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx_pc.H>
 #include <bmx_dem_parms.H>
 #include <bmx_chem_species_parms.H>

diff --git a/src/des/bmx_pc_interaction.cpp b/src/des/bmx_pc_interaction.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx_pc.H>
 #include <bmx_dem_parms.H>
 #include <bmx_bc_parms.H>

diff --git a/src/des/bmx_split_particles.cpp b/src/des/bmx_split_particles.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <bmx.H>
 #include <bmx_chem.H>
 #include <bmx_chem_K.H>

diff --git a/src/diffusion/CMakeLists.txt b/src/diffusion/CMakeLists.txt
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 target_include_directories(bmxcore
    PUBLIC
    $<BUILD_INTERFACE:${CMAKE_CURRENT_LIST_DIR}>)

diff --git a/src/diffusion/Make.package b/src/diffusion/Make.package
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 CEXE_sources += bmx_define_coeffs_on_faces.cpp
 CEXE_sources += bmx_diffusion_op.cpp
 CEXE_headers += bmx_diffusion_op.H

diff --git a/src/diffusion/bmx_define_coeffs_on_faces.cpp b/src/diffusion/bmx_define_coeffs_on_faces.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <AMReX_MultiFabUtil.H>
 #include <bmx_diffusion_op.H>
 #include <bmx_fluid_parms.H>

diff --git a/src/diffusion/bmx_diffuse_chem_species.cpp b/src/diffusion/bmx_diffuse_chem_species.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <AMReX_MultiFabUtil.H>
 #include <bmx_diffusion_op.H>
 #include <bmx_fluid_parms.H>

diff --git a/src/diffusion/bmx_diffusion_op.H b/src/diffusion/bmx_diffusion_op.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #ifndef DIFFUSION_EQUATION_H_
 #define DIFFUSION_EQUATION_H_
 

diff --git a/src/diffusion/bmx_diffusion_op.cpp b/src/diffusion/bmx_diffusion_op.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <AMReX_ParmParse.H>
 #include <AMReX_Vector.H>
 

diff --git a/src/interpolation/CMakeLists.txt b/src/interpolation/CMakeLists.txt
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 target_include_directories( bmxcore
    PUBLIC
    $<BUILD_INTERFACE:${CMAKE_CURRENT_LIST_DIR}>)

diff --git a/src/interpolation/Make.package b/src/interpolation/Make.package
@@ -1 +1,6 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 CEXE_headers += bmx_interp_K.H
diff --git a/src/interpolation/bmx_interp_K.H b/src/interpolation/bmx_interp_K.H
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #ifndef _BMX_INTERP_K_H_
 #define _BMX_INTERP_K_H_
 

diff --git a/src/io/CMakeLists.txt b/src/io/CMakeLists.txt
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 target_sources( bmxcore
    PRIVATE
    bmx_io.cpp

diff --git a/src/io/Make.package b/src/io/Make.package
@@ -1,3 +1,8 @@
+#
+#     Copyright (c) 2013 Battelle Memorial Institute
+#     Licensed under modified BSD License. A copy of this license can be found
+#     in the LICENSE file in the top level directory of this distribution.
+#
 CEXE_sources += bmx_io.cpp
 CEXE_sources += bmx_build_info.cpp
 CEXE_sources += bmx_chk.cpp

diff --git a/src/io/bmx_build_info.cpp b/src/io/bmx_build_info.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include "AMReX_buildInfo.H"
 #include <bmx.H>
 

diff --git a/src/io/bmx_chk.cpp b/src/io/bmx_chk.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <AMReX_MultiFab.H>
 #include <AMReX_PlotFileUtil.H>
 

diff --git a/src/io/bmx_io.cpp b/src/io/bmx_io.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <AMReX_MultiFab.H>
 #include <AMReX_PlotFileUtil.H>
 #include <AMReX_VisMF.H>    // amrex::VisMF::Write(MultiFab)

diff --git a/src/io/bmx_plt.cpp b/src/io/bmx_plt.cpp
@@ -1,3 +1,8 @@
+//
+//     Copyright (c) 2013 Battelle Memorial Institute
+//     Licensed under modified BSD License. A copy of this license can be found
+//     in the LICENSE file in the top level directory of this distribution.
+//
 #include <AMReX_PlotFileUtil.H>
 #include <AMReX_VisMF.H>    // amrex::VisMF::Write(MultiFab)
 #include <AMReX_VectorIO.H> // amrex::[read,write]IntData(array_of_ints)