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fix: Use pyyaml SafeLoader to suppress deprecation warning. #120

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fix: Use pyyaml SafeLoader to suppress deprecation warning. #120

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williamrowell
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https://github.com/yaml/pyyaml/wiki/PyYAML-yaml.load(input)-Deprecation

This should also address errors about unsafe loading, like:

/opt/scripts/calculate_phrank.py:246: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details.
  cohort_list = yaml.load("".join(yamlfile))

@williamrowell williamrowell self-assigned this Mar 12, 2024
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Depends on PacificBiosciences/wdl-dockerfiles#45

@williamrowell williamrowell deleted the fix/pyyaml-safe-loader branch June 13, 2024 18:54
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@gconcepcion gconcepcion gconcepcion approved these changes

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