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@williamrowell williamrowell released this 10 Oct 20:23
· 205 commits to main since this release
v1.0.2
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Learn about vigilant mode.

What's Changed

  • Replaced WhatsHap with HiPhase for concurrent small variant and large indel phasing and alignment haplotagging.
  • Split pbsv call into ~14 equally sized chunks for improved wall time, especially during joint calling.
  • Several tools have been updated to newer versions, including TRGT, HiFiCNV, and pb-cpg-tools.
  • Additionally output raw bcftools roh output in addition to the simplified bed file.
  • Fixed path errors in inputs templates.
  • Tertiary analysis is disabled by default, and tertiary analysis inputs are optional.
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