Add seabiscuit (S/P2-C2) model

PacificBiosciences · Apr 21, 2017 · 694c265 · 694c265
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commit 694c265
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Showing 2 changed files with 4 additions and 8 deletions.
diff --git a/kineticsTools/ipdSummary.py b/kineticsTools/ipdSummary.py
@@ -568,15 +568,11 @@ def getIpdModelFilename(self):
             return self.args.ipdModel
 
         majorityChem = ReferenceUtils.loadAlignmentChemistry(self.alignments)
-        # Temporary solution for Sequel chemistries: we do not
-        # have trained kinetics models in hand yet for Sequel
-        # chemistries.  However we have observed that the P5-C3
-        # training seems to yield fairly good results on Sequel
-        # chemistries to date.  So for the moment, we will use
-        # that model for Sequel data.
+
+        # Route any sequel chemistries to seabsicuit training (for now)
         if majorityChem.startswith("S/"):
-            logging.info("No trained model available yet for Sequel chemistries; modeling as P5-C3")
-            majorityChem = "P5-C3"
+            majorityChem = "SP2-C2"
+
         if majorityChem == 'unknown':
             logging.error("Chemistry cannot be identified---cannot perform kinetic analysis")
             sys.exit(1)

diff --git a/kineticsTools/resources/SP2-C2.h5 b/kineticsTools/resources/SP2-C2.h5