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I saw the Sydney core facility is using -XX:ParallelGCThreads=${NCPUS} for GATK commands. It was found that garbage collection would be spawning 70 threads which slowed down processing quite a bit. Would such a limit be useful to GRIDSS, too?
The text was updated successfully, but these errors were encountered:
gridss.sh has the following default
I saw the Sydney core facility is using
-XX:ParallelGCThreads=${NCPUS}
for GATK commands. It was found that garbage collection would be spawning 70 threads which slowed down processing quite a bit. Would such a limit be useful to GRIDSS, too?The text was updated successfully, but these errors were encountered: