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2.5.1

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@d-cameron d-cameron released this 15 Aug 04:27
· 748 commits to master since this release

Mostly bug fixes and driver script changes:

  • Fixed log message error causing premature assembly safety mode abort
  • Relaxing input BAM sort order checks to only require correctly sorted according to SAM file sort ordering
  • Reducing memory usage by skipping directed evidence re-sorting when performing assembly
  • Driver script tweaks:
    • #232 using "sambamba -n" for sorting for compatibility with older versions of sambamba
    • #233 Using 4g for entry points that do not use the --jvmheap option
    • Added bash version to driver script output
    • Using -Xms to test max memory usage up-front