1.2.1

Fix parsing of empty BAM header tags
ParkerLab · Jul 8, 2020 · 1a2e8c5 · 1a2e8c5
1 parent 8fbd929
commit 1a2e8c5
Show file tree

Hide file tree

Showing 4 changed files with 9 additions and 3 deletions.
diff --git a/Makefile b/Makefile
@@ -2,7 +2,7 @@
 # VARIABLES
 #
 
-VERSION = 1.2.0
+VERSION = 1.2.1
 
 #
 # PATHS

diff --git a/debian/changelog b/debian/changelog
@@ -1,3 +1,9 @@
+ataqv (1.2.1-1) unstable; urgency=medium
+
+  * Fix parsing of empty BAM header tags
+
+ -- Parker Lab Software <parkerlab-software@umich.edu>  Wed, 8 Jul 2020 11:30:00 -0400
+
 ataqv (1.2.0-1) unstable; urgency=medium
 
   * Add option to reduce redundant metrics

diff --git a/src/cpp/HTS.cpp b/src/cpp/HTS.cpp
@@ -37,7 +37,7 @@ sam_header parse_sam_header(const std::string &header_text) {
             std::stringstream field_stream(field);
             for (std::string field_text; std::getline(field_stream, field_text, '\t');) {
                 std::vector<std::string> splitfield = split(field_text, ":");
-                field_map[splitfield[0]] = splitfield[1];
+                field_map[splitfield[0]] = splitfield.size() > 1 ? splitfield[1] : "";
             }
         }
         header[header_tag].push_back(field_map);

diff --git a/src/cpp/Version.hpp b/src/cpp/Version.hpp
@@ -4,4 +4,4 @@
 // Licensed under Version 3 of the GPL or any later version
 //
 
-#define VERSION "1.2.0"
+#define VERSION "1.2.1"