Update use_of_code_in_research.qmd - mapping to reproducibility indicators #92
Workflow file for this run
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| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| name: Render indicator handbook | |
| jobs: | |
| build_deploy: | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'PathOS-project/indicator_handbook' | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - name: Setup quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Check quarto | |
| run: quarto check | |
| - name: (Causal intro) Install system dependencies | |
| run: sudo apt install -y libglpk40 libpoppler-cpp-dev poppler-data libjpeg-dev libmagick++-dev libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - name: (Causal intro) Setup renv | |
| uses: r-lib/actions/setup-renv@v2 | |
| with: | |
| working-directory: causal_intro | |
| - name: (Causal intro) Cache targets | |
| id: cache-targets | |
| uses: actions/cache@v3 | |
| with: | |
| path: causal_intro/_targets | |
| key: ${{ runner.os }}-targets | |
| - name: (Causal intro) Build targets | |
| run: targets::tar_make(simulate) | |
| shell: Rscript {0} | |
| working-directory: causal_intro | |
| - name: (Causal intro) Render quarto | |
| run: quarto render | |
| working-directory: causal_intro | |
| - name: Render quarto project | |
| uses: quarto-dev/quarto-actions/render@v2 | |
| - uses: athenarc/actions-docker-build-push@master | |
| id: docker_build | |
| with: | |
| DOCKER_REGISTRY: "pathos.docker.imsi.athenarc.gr" | |
| DOCKER_REPO: "indicator_handbook" | |
| DOCKER_USER: "builder" | |
| DOCKER_PASSWORD: "${{ secrets.DOCKER_PASSWORD }}" | |
| if: github.ref == 'refs/heads/main' | |
| - uses: athenarc/actions-docker-compose-deploy@master | |
| id: docker_deploy | |
| with: | |
| AUTH_TOKEN: "${{ secrets.DEPLOY_AUTH_TOKEN }}" | |
| USE_PULL_REPO: "false" | |
| DEPLOY_URL: "https://delphinus.imsi.athenarc.gr/docker-compose-deploy/deploy" | |
| IMAGES: "${{ steps.docker_build.outputs.images }}" | |
| if: github.ref == 'refs/heads/main' |