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Add AtlasPack atlases #330

Merged
merged 21 commits into from
Oct 10, 2023
Merged

Add AtlasPack atlases #330

merged 21 commits into from
Oct 10, 2023

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tsalo
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@tsalo tsalo commented Oct 4, 2023

Closes none, but relates to https://github.com/PennLINC/informatics_misc/issues/49.

Changes proposed in this pull request

  • Add AtlasPack atlases (already in aslprep_build) to ASLPrep.

@tsalo tsalo added enhancement New feature or request breaking-change PRs that change results or interfaces. labels Oct 4, 2023
@tsalo tsalo requested a review from mattcieslak October 6, 2023 17:51
@@ -690,3 +690,111 @@ @article{wang2008empirical
url={https://doi.org/10.1016/j.mri.2007.07.003},
doi={10.1016/j.mri.2007.07.003}
}

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It makes sense to add the 4S atlas citations here right? Instead of maintaining a separate bib file in AtlasPack?

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I think it's a good idea to have a bib file in the AtlasPack repo as well, just as something to check against, but if we want to describe the atlases in the boilerplate then we'll need the bibtex references in each prep repo anyway.

aslprep/utils/atlas.py Show resolved Hide resolved
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codecov-commenter commented Oct 6, 2023

Codecov Report

Attention: 40 lines in your changes are missing coverage. Please review.

Files Coverage Δ
aslprep/cli/run.py 0.00% <ø> (ø)
aslprep/workflows/asl/base.py 87.28% <ø> (ø)
aslprep/workflows/asl/cbf.py 73.01% <100.00%> (+1.66%) ⬆️
aslprep/workflows/asl/gecbf.py 92.17% <ø> (ø)
aslprep/utils/bids.py 41.07% <6.66%> (-5.33%) ⬇️
aslprep/utils/atlas.py 8.57% <3.70%> (+0.46%) ⬆️

... and 2 files with indirect coverage changes

📢 Thoughts on this report? Let us know!.

@tsalo tsalo merged commit 629a4dd into PennLINC:main Oct 10, 2023
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@tsalo tsalo deleted the atlaspack branch October 10, 2023 13:24
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3 participants