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Releases: PhysiCell-Tools/PhysiCell-Studio

v2.34.3 - cleanup /data and add tumor_demo model there

23 Mar 11:51
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v2.34.2 - add more deps to env

22 Mar 14:27
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Merge pull request #182 from PhysiCell-Tools/development

Development

v2.34.1 - added conda env

22 Mar 11:08
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  • environment.yml

v2.34.0 - bugfix; minor features

21 Mar 21:51
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  • fix handling of anndata not loaded (for beta bioinfo ICs tab)
  • add link in Help menu to Issues
  • provide a requirements.txt for those wanting a minimal Python install

v2.33.1 - bugfix

15 Mar 17:34
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  • fix bug in bioinfo tab when deleting a cell type

v2.33.0 - new bioinf subtab for ICs

07 Mar 00:16
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  • new subtab for bioinformatics on ICs (but need argument on startup) - thanks Daniel Bergman!
$ python bin/studio.py --help
usage: studio.py [-h] [-b] [-3] [-t] [-r] [-x] [--nanohub] [-c  CONFIG] [-e  EXEC] [--bioinf_import]
                 [--bioinf_import_test] [--bioinf_import_test_spatial]

PhysiCell Studio.

options:
  -h, --help            show this help message and exit
  -b , --bare, --basic  no plotting, etc
  -3 , --three, --3D    assume a 3D model
  -t , --tensor         for 3D ellipsoid cells
  -r , --rules, --Rules
                        display Rules tab
  -x , --skip_validate  do not attempt to validate the config (.xml) file
  --nanohub             run as if on nanoHUB
  -c  CONFIG, --config CONFIG
                        config file (.xml)
  -e  EXEC, --exec EXEC
                        executable model
  --bioinf_import       display bioinformatics import tab on ICs tab
  --bioinf_import_test  immediately start loading anndata w/o spatial
  --bioinf_import_test_spatial
                        immediately start loading spatial anndata

v2.32.0 - improved colorbar on cell scalars; ICs show x,y

18 Feb 20:08
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  • improved colorbar for cells' discrete scalars (.mat), has labels - thanks Vincent Noël
  • ICs tab now shows domain (x,y) for dynamic mouse location
  • rm pmb.py
  • "Description" instead of just "Desc" for User Params and cells' Custom Data
  • prevent warning popup for missing rules .csv file if rules are not enabled

v2.31.2 - fix segfault when closing the Studio

08 Feb 19:16
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  • fix a bug involving a Qt spacer in vis_base that caused a segfault when Studio was closed (thanks Marco Ruscone!)

v2.31.1 - fixes, features

08 Feb 19:02
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  • fix buggy mechanics grid plot
  • fix config/interactions.xml (attachment rates=0)
  • create a config/PhysiCell_settings.xml
  • look for/use a default config/PhysiCell_settings.xml in whichever dir Studio is started from
  • bump version

v2.31.0 - improve PhysiBoSS layout; add Action menu

23 Jan 10:46
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  • when running a boolean intracellular model, the PhysiBoSS widget layout is improved (thanks Marco Ruscone!)
  • added an Action menu with a hotkey (^R) to Run a simulation (to save some clicks when changing params)