Releases: PhysiCell-Tools/PhysiCell-Studio
Releases · PhysiCell-Tools/PhysiCell-Studio
v2.34.3 - cleanup /data and add tumor_demo model there
v2.34.2 - add more deps to env
Merge pull request #182 from PhysiCell-Tools/development Development
v2.34.1 - added conda env
- environment.yml
v2.34.0 - bugfix; minor features
- fix handling of anndata not loaded (for beta bioinfo ICs tab)
- add link in Help menu to Issues
- provide a requirements.txt for those wanting a minimal Python install
v2.33.1 - bugfix
- fix bug in bioinfo tab when deleting a cell type
v2.33.0 - new bioinf subtab for ICs
- new subtab for bioinformatics on ICs (but need argument on startup) - thanks Daniel Bergman!
$ python bin/studio.py --help
usage: studio.py [-h] [-b] [-3] [-t] [-r] [-x] [--nanohub] [-c CONFIG] [-e EXEC] [--bioinf_import]
[--bioinf_import_test] [--bioinf_import_test_spatial]
PhysiCell Studio.
options:
-h, --help show this help message and exit
-b , --bare, --basic no plotting, etc
-3 , --three, --3D assume a 3D model
-t , --tensor for 3D ellipsoid cells
-r , --rules, --Rules
display Rules tab
-x , --skip_validate do not attempt to validate the config (.xml) file
--nanohub run as if on nanoHUB
-c CONFIG, --config CONFIG
config file (.xml)
-e EXEC, --exec EXEC
executable model
--bioinf_import display bioinformatics import tab on ICs tab
--bioinf_import_test immediately start loading anndata w/o spatial
--bioinf_import_test_spatial
immediately start loading spatial anndata
v2.32.0 - improved colorbar on cell scalars; ICs show x,y
- improved colorbar for cells' discrete scalars (.mat), has labels - thanks Vincent Noël
- ICs tab now shows domain (x,y) for dynamic mouse location
- rm pmb.py
- "Description" instead of just "Desc" for User Params and cells' Custom Data
- prevent warning popup for missing rules .csv file if rules are not enabled
v2.31.2 - fix segfault when closing the Studio
- fix a bug involving a Qt spacer in vis_base that caused a segfault when Studio was closed (thanks Marco Ruscone!)
v2.31.1 - fixes, features
- fix buggy mechanics grid plot
- fix config/interactions.xml (attachment rates=0)
- create a config/PhysiCell_settings.xml
- look for/use a default config/PhysiCell_settings.xml in whichever dir Studio is started from
- bump version
v2.31.0 - improve PhysiBoSS layout; add Action menu
- when running a boolean intracellular model, the PhysiBoSS widget layout is improved (thanks Marco Ruscone!)
- added an
Action
menu with a hotkey (^R) to Run a simulation (to save some clicks when changing params)