Adding annotation of potential doublets to anndata obs #820
Workflow file for this run
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| #schema: https://github.com/softprops/github-actions-schemas/blob/master/workflow.json | |
| name: "Documentation" | |
| on: | |
| push: | |
| branches: [main, dev] | |
| pull_request: | |
| branches: [main, dev] | |
| workflow_dispatch: | |
| permissions: | |
| id-token: write | |
| actions: write | |
| contents: read | |
| packages: write | |
| env: | |
| ANNOY_COMPILER_ARGS: "-DANNOYLIB_MULTITHREADED_BUILD,-mno-avx512f" | |
| jobs: | |
| pre_job: | |
| continue-on-error: true | |
| runs-on: ubuntu-latest | |
| # Map a step output to a job output | |
| outputs: | |
| should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
| paths_result: ${{ steps.skip_check.outputs.paths_result }} | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@v5 | |
| if: ${{ !github.event.act }} | |
| with: | |
| concurrent_skipping: "same_content_newer" | |
| skip_after_successful_duplicate: "true" | |
| do_not_skip: '["workflow_dispatch"]' | |
| paths_filter: | | |
| main: | |
| paths: | |
| - 'src/pixelator/**' | |
| - 'docs/**' | |
| - '**/*.md' | |
| - '**/*.rst' | |
| docs: | |
| name: "Build documentation" | |
| runs-on: ubuntu-latest | |
| needs: | |
| - pre_job | |
| if: needs.pre_job.outputs.should_skip == '{}' || !fromJSON(needs.pre_job.outputs.paths_result).main.should_skip | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python environment | |
| uses: ./.github/actions/setup-python | |
| with: | |
| python-version: "3.11" | |
| - name: Create dependencies file | |
| run: | | |
| pip install poetry | |
| poetry export --output requirements.txt --without-hashes --no-interaction --no-ansi --with dev | |
| pip install -r requirements.txt | |
| - name: Sphinx Build | |
| run: | | |
| sphinx-build -b html docs docs/_build | |
| - name: Archive documentation | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: documentation | |
| path: | | |
| docs/_build |