fix: bug in compute_transition_probabilities #688
Workflow file for this run
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| #schema: https://github.com/softprops/github-actions-schemas/blob/master/workflow.json | |
| name: "Code checks" | |
| on: | |
| push: | |
| branches: [main, dev] | |
| pull_request: | |
| branches: [main, dev] | |
| workflow_dispatch: | |
| permissions: | |
| id-token: write | |
| actions: write | |
| contents: read | |
| packages: write | |
| env: | |
| ANNOY_COMPILER_ARGS: "-DANNOYLIB_MULTITHREADED_BUILD,-mno-avx512f" | |
| jobs: | |
| pre_job: | |
| continue-on-error: true | |
| runs-on: ubuntu-latest | |
| # Map a step output to a job output | |
| outputs: | |
| should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
| paths_result: ${{ steps.skip_check.outputs.paths_result }} | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@v5 | |
| if: ${{ !github.event.act }} | |
| with: | |
| concurrent_skipping: "same_content_newer" | |
| skip_after_successful_duplicate: "true" | |
| do_not_skip: '["workflow_dispatch"]' | |
| paths_filter: | | |
| python: | |
| paths: | |
| - 'pyproject.toml' | |
| - 'poetry.lock' | |
| - 'src/pixelator/**' | |
| - 'tests/**' | |
| paths_ignore: | |
| - 'tests/**/*.md' | |
| lint: | |
| name: "Lint" | |
| runs-on: ubuntu-latest | |
| needs: [pre_job] | |
| if: needs.pre_job.outputs.paths_result == '{}' || !fromJSON(needs.pre_job.outputs.paths_result).python.should_skip | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python environment | |
| uses: ./.github/actions/setup-python | |
| with: | |
| python-version: "3.11" | |
| - name: ruff linter | |
| uses: chartboost/ruff-action@v1 | |
| format-check: | |
| name: "Check formatting" | |
| needs: pre_job | |
| if: needs.pre_job.outputs.should_skip != 'true' || !fromJSON(needs.pre_job.outputs.paths_result).python.should_skip | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: ruff formatter | |
| uses: chartboost/ruff-action@v1 | |
| with: | |
| args: "format --check" | |
| # If the above check failed, post a comment on the PR explaining the failure | |
| - name: Post PR comment | |
| if: failure() | |
| uses: mshick/add-pr-comment@v1 | |
| with: | |
| message: | | |
| ## Python linting (`ruff format`) is failing | |
| To keep the code consistent with lots of contributors, we run automated code consistency checks. | |
| To fix this CI test, please run: | |
| * `task format` | |
| Once you push these changes the test should pass, and you can hide this comment :+1: | |
| Thanks again for your contribution! | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| allow-repeats: false | |
| typecheck: | |
| name: "Typecheck" | |
| needs: [pre_job] | |
| runs-on: ubuntu-latest | |
| if: needs.pre_job.outputs.should_skip != 'true' || !fromJSON(needs.pre_job.outputs.paths_result).python.should_skip | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python environment | |
| uses: ./.github/actions/setup-python | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| pip install poetry | |
| poetry export --output requirements.txt --without-hashes --no-interaction --no-ansi --with dev | |
| pip install -r requirements.txt | |
| - name: Run mypy | |
| run: | | |
| mypy --ignore-missing-imports --install-types --non-interactive src/pixelator |