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Add Barlow Twins loss for representation learning #7530
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Signed-off-by: Lucas Robinet <robinet.lucas@iuct-oncopole.fr>
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Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Signed-off-by: Lucas Robinet <67736918+Lucas-rbnt@users.noreply.github.com>
Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Signed-off-by: Lucas Robinet <67736918+Lucas-rbnt@users.noreply.github.com>
…s aim and use cases Signed-off-by: Lucas Robinet <robinet.lucas@iuct-oncopole.fr>
ericspod
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Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Signed-off-by: Lucas Robinet <67736918+Lucas-rbnt@users.noreply.github.com>
KumoLiu
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Thanks for the PR! The overall work looks good to me.
However, I have one comment regarding the batch_size
. Please take a look when you get a chance
Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Lucas Robinet <67736918+Lucas-rbnt@users.noreply.github.com>
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Signed-off-by: Lucas Robinet <robinet.lucas@iuct-oncopole.fr>
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### Description Addition of the BarlowTwinsLoss class. This cost function is introduced in the http://proceedings.mlr.press/v139/zbontar21a/zbontar21a.pdf paper with the aim of disentangling the representations learned on two views of the same sample, making it a powerful tool for multimodal and unsupervised learning. This cost function is similar to the InfoNCE Loss function already implemented in MONAI (https://docs.monai.io/en/latest/_modules/monai/losses/contrastive.html#ContrastiveLoss). However, it differs in several respects: there is no l2-normalisation, but rather a z-normalisation. In addition, rather than working between pairs of embeddings, Barlow Twins seeks to decorrelate the components of the representations. ```math \mathcal{L}_{BT} := \sum_i (1 - \mathcal{C}_{ii})^2 + \lambda \sum_i \sum_{i\neq j} \mathcal{C}_{ij}^2 ``` with $\lambda$ a positive hyperparameters and $\mathcal{C}$ the cross-correlation matrix ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Lucas Robinet <robinet.lucas@iuct-oncopole.fr> Signed-off-by: Lucas Robinet <67736918+Lucas-rbnt@users.noreply.github.com> Co-authored-by: Lucas Robinet <robinet.lucas@iuct-oncopole.fr> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Signed-off-by: Juan Pablo de la Cruz Gutiérrez <juampatronics@gmail.com>
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### Description Addition of the BarlowTwinsLoss class. This cost function is introduced in the http://proceedings.mlr.press/v139/zbontar21a/zbontar21a.pdf paper with the aim of disentangling the representations learned on two views of the same sample, making it a powerful tool for multimodal and unsupervised learning. This cost function is similar to the InfoNCE Loss function already implemented in MONAI (https://docs.monai.io/en/latest/_modules/monai/losses/contrastive.html#ContrastiveLoss). However, it differs in several respects: there is no l2-normalisation, but rather a z-normalisation. In addition, rather than working between pairs of embeddings, Barlow Twins seeks to decorrelate the components of the representations. ```math \mathcal{L}_{BT} := \sum_i (1 - \mathcal{C}_{ii})^2 + \lambda \sum_i \sum_{i\neq j} \mathcal{C}_{ij}^2 ``` with $\lambda$ a positive hyperparameters and $\mathcal{C}$ the cross-correlation matrix ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Lucas Robinet <robinet.lucas@iuct-oncopole.fr> Signed-off-by: Lucas Robinet <67736918+Lucas-rbnt@users.noreply.github.com> Co-authored-by: Lucas Robinet <robinet.lucas@iuct-oncopole.fr> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Signed-off-by: Yu0610 <612410030@alum.ccu.edu.tw>
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Description
Addition of the BarlowTwinsLoss class. This cost function is introduced in the http://proceedings.mlr.press/v139/zbontar21a/zbontar21a.pdf paper with the aim of disentangling the representations learned on two views of the same sample, making it a powerful tool for multimodal and unsupervised learning.
This cost function is similar to the InfoNCE Loss function already implemented in MONAI (https://docs.monai.io/en/latest/_modules/monai/losses/contrastive.html#ContrastiveLoss). However, it differs in several respects: there is no l2-normalisation, but rather a z-normalisation. In addition, rather than working between pairs of embeddings, Barlow Twins seeks to decorrelate the components of the representations.
with$\lambda$ a positive hyperparameters and $\mathcal{C}$ the cross-correlation matrix
Types of changes
./runtests.sh -f -u --net --coverage
../runtests.sh --quick --unittests --disttests
.make html
command in thedocs/
folder.