Updated files with 'repo_helper'. (#18) #44
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| # This file is managed by 'repo_helper'. Don't edit it directly. | |
| --- | |
| name: Conda Tests | |
| on: | |
| push: | |
| branches: ["master"] | |
| permissions: | |
| contents: read | |
| jobs: | |
| tests: | |
| name: "Conda" | |
| runs-on: ubuntu-22.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: "actions/checkout@v3" | |
| - name: Setup Python 🐍 | |
| uses: "actions/setup-python@v4" | |
| with: | |
| python-version: "3.8" | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: env | |
| conda-build-version: 3.23.3 | |
| python-version: "3.8" | |
| miniforge-variant: Mambaforge | |
| - name: Install dependencies 🔧 | |
| run: | | |
| python -VV | |
| python -m site | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade "whey-conda" "whey" | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| $CONDA/bin/conda update -n base conda | |
| $CONDA/bin/conda config --add channels bioconda | |
| $CONDA/bin/conda config --add channels conda-forge | |
| $CONDA/bin/conda config --add channels domdfcoding | |
| - name: "Build and index channel" | |
| run: | | |
| python -m whey --builder whey_conda --out-dir conda-bld/noarch | |
| $CONDA/bin/conda index ./conda-bld || exit 1 | |
| - name: "Search for package" | |
| run: | | |
| $CONDA/bin/conda search -c file://$(pwd)/conda-bld pymassspec-plot | |
| $CONDA/bin/conda search -c file://$(pwd)/conda-bld --override-channels pymassspec-plot | |
| - name: "Install package" | |
| run: | | |
| $CONDA/bin/conda install -c file://$(pwd)/conda-bld pymassspec-plot=0.2.0=py_1 -y || exit 1 | |
| - name: "Run Tests" | |
| run: | | |
| rm -rf pymassspec_plot | |
| $CONDA/bin/conda install pytest coincidence || exit 1 | |
| pip install -r tests/requirements.txt | |
| pytest tests/ |