[repo-helper] Configuration Update #171
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| # This file is managed by 'repo_helper'. Don't edit it directly. | |
| --- | |
| name: Linux | |
| on: | |
| push: | |
| branches-ignore: | |
| - 'repo-helper-update' | |
| - 'pre-commit-ci-update-config' | |
| - 'imgbot' | |
| tags: | |
| - '*' | |
| pull_request: | |
| permissions: | |
| actions: write | |
| issues: write | |
| contents: read | |
| jobs: | |
| tests: | |
| name: "ubuntu-20.04 / Python ${{ matrix.config.python-version }}" | |
| runs-on: "ubuntu-20.04" | |
| continue-on-error: ${{ matrix.config.experimental }} | |
| env: | |
| USING_COVERAGE: '3.7,3.8,3.9,3.10,3.11' | |
| strategy: | |
| fail-fast: False | |
| matrix: | |
| config: | |
| - {python-version: "3.7", testenvs: "py37,build", experimental: False} | |
| - {python-version: "3.8", testenvs: "py38,build", experimental: False} | |
| - {python-version: "3.9", testenvs: "py39,build", experimental: False} | |
| - {python-version: "3.10", testenvs: "py310,build", experimental: False} | |
| - {python-version: "3.11", testenvs: "py311,build", experimental: False} | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: "actions/checkout@v4" | |
| - name: Check for changed files | |
| if: startsWith(github.ref, 'refs/tags/') != true | |
| uses: dorny/paths-filter@v2 | |
| id: changes | |
| with: | |
| list-files: "json" | |
| filters: | | |
| code: | |
| - '!(doc-source/**|CONTRIBUTING.rst|.imgbotconfig|.pre-commit-config.yaml|.pylintrc|.readthedocs.yml)' | |
| - name: Setup Python 🐍 | |
| id: setup-python | |
| if: ${{ steps.changes.outputs.code == 'true' || steps.changes.outcome == 'skipped' }} | |
| uses: "actions/setup-python@v5" | |
| with: | |
| python-version: "${{ matrix.config.python-version }}" | |
| - name: Install dependencies 🔧 | |
| if: steps.setup-python.outcome == 'success' | |
| run: | | |
| python -VV | |
| python -m site | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade tox~=3.0 virtualenv!=20.16.0 | |
| python -m pip install --upgrade coverage_pyver_pragma | |
| sudo add-apt-repository universe | |
| sudo apt update | |
| sudo apt install libhdf5-dev netcdf-bin libnetcdf-dev | |
| - name: "Run Tests for Python ${{ matrix.config.python-version }}" | |
| if: steps.setup-python.outcome == 'success' | |
| run: python -m tox -e "${{ matrix.config.testenvs }}" -s false | |
| - name: "Upload Coverage 🚀" | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() && steps.setup-python.outcome == 'success' }} | |
| with: | |
| name: "coverage-${{ matrix.config.python-version }}" | |
| path: .coverage | |
| Coverage: | |
| needs: tests | |
| runs-on: "ubuntu-20.04" | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: "actions/checkout@v4" | |
| - name: Setup Python 🐍 | |
| uses: "actions/setup-python@v5" | |
| with: | |
| python-version: 3.8 | |
| - name: Install dependencies 🔧 | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade "coveralls>=3.0.0" coverage_pyver_pragma | |
| - name: "Download Coverage 🪂" | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: coverage | |
| - name: Display structure of downloaded files | |
| id: show | |
| run: ls -R | |
| working-directory: coverage | |
| continue-on-error: true | |
| - name: Combine Coverage 👷 | |
| if: ${{ steps.show.outcome != 'failure' }} | |
| run: | | |
| shopt -s globstar | |
| python -m coverage combine coverage/**/.coverage | |
| - name: "Upload Combined Coverage Artefact 🚀" | |
| if: ${{ steps.show.outcome != 'failure' }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: "combined-coverage" | |
| path: .coverage | |
| - name: "Upload Combined Coverage to Coveralls" | |
| if: ${{ steps.show.outcome != 'failure' }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| coveralls --service=github | |
| Deploy: | |
| needs: tests | |
| runs-on: "ubuntu-20.04" | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: "actions/checkout@v4" | |
| if: startsWith(github.ref, 'refs/tags/') | |
| - name: Setup Python 🐍 | |
| uses: "actions/setup-python@v5" | |
| if: startsWith(github.ref, 'refs/tags/') | |
| with: | |
| python-version: 3.8 | |
| - name: Install dependencies 🔧 | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade tox~=3.0 | |
| - name: Build distributions 📦 | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: | | |
| tox -e build | |
| - name: Upload distribution to PyPI 🚀 | |
| if: startsWith(github.ref, 'refs/tags/') | |
| uses: pypa/gh-action-pypi-publish@v1.4.2 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_TOKEN }} | |
| skip_existing: true | |
| - name: Close milestone 🚪 | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: | | |
| python -m pip install --upgrade github3.py packaging | |
| python .github/milestones.py | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| Conda: | |
| needs: deploy | |
| runs-on: ubuntu-22.04 | |
| if: startsWith(github.ref, 'refs/tags/') || (startsWith(github.event.head_commit.message, 'Bump version') != true) | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: "actions/checkout@v4" | |
| - name: Setup Python 🐍 | |
| uses: "actions/setup-python@v5" | |
| with: | |
| python-version: 3.8 | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: env | |
| conda-build-version: 3.28.4 | |
| python-version: "3.8" | |
| miniforge-variant: Mambaforge | |
| - name: Install dependencies 🔧 | |
| run: | | |
| python -VV | |
| python -m site | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade "mkrecipe" "whey" | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| $CONDA/bin/conda config --set always_yes yes --set changeps1 no | |
| $CONDA/bin/conda update -n base conda | |
| $CONDA/bin/conda info -a | |
| $CONDA/bin/conda config --add channels bioconda | |
| $CONDA/bin/conda config --add channels conda-forge | |
| $CONDA/bin/conda config --add channels domdfcoding | |
| $CONDA/bin/conda config --remove channels defaults | |
| - name: Build Conda Package 📦 | |
| run: | | |
| python -m mkrecipe --type wheel || exit 1 | |
| $CONDA/bin/conda build conda -c conda-forge -c domdfcoding --output-folder conda/dist | |
| - name: Deploy Conda Package 🚀 | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: | | |
| $CONDA/bin/conda config --set always_yes yes --set changeps1 no | |
| $CONDA/bin/conda install anaconda-client | |
| $CONDA/bin/conda info -a | |
| for f in conda/dist/noarch/pymassspec-plot-*.tar.bz2; do | |
| [ -e "$f" ] || continue | |
| echo "$f" | |
| conda install "$f" || exit 1 | |
| echo "Deploying to Anaconda.org..." | |
| $CONDA/bin/anaconda -t "$ANACONDA_TOKEN" upload "$f" || exit 1 | |
| echo "Successfully deployed to Anaconda.org." | |
| done | |
| env: | |
| ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} |