nanopore-scripts

Scripts from Scott Gigante, modified to work from my directories.

Name		Name	Last commit message	Last commit date
Latest commit History 41 Commits
LICENSE		LICENSE
README.md		README.md
albacore.sh		albacore.sh
albacore122.sh		albacore122.sh
albacore122_run.sh		albacore122_run.sh
albacore122_run_torq3.sh		albacore122_run_torq3.sh
albacore122_torq3.sh		albacore122_torq3.sh
albacore211.sh		albacore211.sh
albacore211_run.sh		albacore211_run.sh
albacore_run.sh		albacore_run.sh
extract_and_align.sh		extract_and_align.sh
extract_only.sh		extract_only.sh
extract_only_torq3.sh		extract_only_torq3.sh
extract_only_torq3_nanop8.5.sh		extract_only_torq3_nanop8.5.sh
map.sh		map.sh
map_clean.sh		map_clean.sh
map_run.sh		map_run.sh
mask_genome_variants.py		mask_genome_variants.py
merge_tsv.sh		merge_tsv.sh
nanopolish_methylation.sh		nanopolish_methylation.sh
nanopolish_methylation_085.sh		nanopolish_methylation_085.sh
nanopolish_methylation_clean.sh		nanopolish_methylation_clean.sh
nanopolish_methylation_run.sh		nanopolish_methylation_run.sh
nanopolish_methylation_run_085.sh		nanopolish_methylation_run_085.sh
nanopolish_phase_reads.sh		nanopolish_phase_reads.sh
nanopolish_phase_reads_clean.sh		nanopolish_phase_reads_clean.sh
nanopolish_phase_reads_run.sh		nanopolish_phase_reads_run.sh
remove_phage_and_extract.sh		remove_phage_and_extract.sh
remove_phage_reads.py		remove_phage_reads.py
split_bam_and_fasta.py		split_bam_and_fasta.py
split_fasta.py		split_fasta.py

Provide feedback