Fix explicitly calibrated gates in GateDirection (backport #9786)

[mergify]

This is an automatic backport of pull request #9786 done by Mergify.
Cherry-pick of c2affb1 has failed:

On branch mergify/bp/stable/0.23/pr-9786
Your branch is up to date with 'origin/stable/0.23'.

You are currently cherry-picking commit c2affb145.
  (fix conflicts and run "git cherry-pick --continue")
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Changes to be committed:
	modified:   qiskit/transpiler/passes/utils/gate_direction.py
	new file:   releasenotes/notes/fix-gate-direction-calibration-c51202358d86e18f.yaml

Unmerged paths:
  (use "git add <file>..." to mark resolution)
	both modified:   test/python/transpiler/test_gate_direction.py

To fix up this pull request, you can check it out locally. See documentation: https://docs.github.com/en/github/collaborating-with-pull-requests/reviewing-changes-in-pull-requests/checking-out-pull-requests-locally

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