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try more threads #453

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Dec 1, 2023
Merged

try more threads #453

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4 changes: 2 additions & 2 deletions tools/matchms/matchms_formatter.xml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy1" profile="21.09">
<tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy2" profile="21.09">
<description>reformat scores object of matchms to long format table</description>

<macros>
Expand All @@ -24,7 +24,7 @@
<environment_variables>
<environment_variable name="MPLCONFIGDIR">\$_GALAXY_JOB_TMP_DIR</environment_variable>
<environment_variable name="XDG_CACHE_HOME">\$_GALAXY_JOB_TMP_DIR</environment_variable>
<environment_variable name="OPENBLAS_NUM_THREADS">1</environment_variable>
<environment_variable name="OPENBLAS_NUM_THREADS">4</environment_variable>
</environment_variables>

<configfiles>
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4 changes: 2 additions & 2 deletions tools/matchms/matchms_metadata_merge.xml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<tool id="matchms_metadata_merge" name="matchms metadata merge" version="@TOOL_VERSION@+galaxy2" profile="21.09">
<tool id="matchms_metadata_merge" name="matchms metadata merge" version="@TOOL_VERSION@+galaxy3" profile="21.09">
<description>Merge metadata csv into MSP by a specified column</description>

<macros>
Expand All @@ -22,7 +22,7 @@
]]></command>

<environment_variables>
<environment_variable name="OPENBLAS_NUM_THREADS">1</environment_variable>
<environment_variable name="OPENBLAS_NUM_THREADS">4</environment_variable>
</environment_variables>

<configfiles>
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4 changes: 2 additions & 2 deletions tools/matchms/matchms_subsetting.xml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<tool id="matchms_subsetting" name="matchms subsetting" version="@TOOL_VERSION@+galaxy2" profile="21.09">
<tool id="matchms_subsetting" name="matchms subsetting" version="@TOOL_VERSION@+galaxy3" profile="21.09">
<description>Extract spectra from a library given unique metadata identifier</description>

<macros>
Expand All @@ -22,7 +22,7 @@
]]></command>

<environment_variables>
<environment_variable name="OPENBLAS_NUM_THREADS">1</environment_variable>
<environment_variable name="OPENBLAS_NUM_THREADS">4</environment_variable>
</environment_variables>

<configfiles>
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4 changes: 2 additions & 2 deletions tools/rem_complex/rem_complex.xml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<tool id="rem_complex" name="Remove coordination complexes" version="@TOOL_VERSION@+galaxy1" profile="21.09">
<tool id="rem_complex" name="Remove coordination complexes" version="@TOOL_VERSION@+galaxy2" profile="21.09">
<description>Remove molecular coordination complexes from a list of structure representations</description>
<macros>
<import>macros.xml</import>
Expand All @@ -16,7 +16,7 @@
]]></command>

<environment_variables>
<environment_variable name="OPENBLAS_NUM_THREADS">1</environment_variable>
<environment_variable name="OPENBLAS_NUM_THREADS">4</environment_variable>
</environment_variables>

<inputs>
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