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Use a pointer in README to index
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sajith committed Apr 3, 2024
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Expand Up @@ -7,42 +7,9 @@ X-CITE is geared toward the community of scientists and researchers
using the [CHESS] synchrotron X-ray facility and similar light
sources.

The top-level course design is as follows:

## Theme 1: Programming Fundamentals

- PE 100: Python Programming and Jupyter notebooks
- PE 101: Using Python packages & libraries, Conda
- PE 102: Numerical data analysis with Python
- PE 103: Software [version control], [testing] and [debugging]

## Theme 2: Systems Fundamentals

- SF 100: Intro to Linux, commandline, and scripting
- SF 101: Containers and virtualization
- SF 200: Parallel computing concepts
- SF 201: Batch Systems and compute farms with CHESS example

## Theme 3: Distributed Computing and the CI Ecosystem

- DC 100: Distributed computing concepts
- DC 101: Scientific Workflow management
- DC 102: Using science gateways with Open OnDemand example
- DC 200: Computing with CI ecosystem - ACCESS, PATh, Campus, Cloud

## Theme 4: X-Ray Science S&E Software

## Theme 5: Data Curation and FAIR

- CF 100: Intro to domain metadata standards, formats and repositories
- CF 101: Best practices for developing DMP
- CF 102: Metadata annotation and DOI
- CF 200: Curating data, code, workflows, and publishing
See [index] for an outline of the course material.

<!-- References -->

[CHESS]: https://www.chess.cornell.edu/

[version control]: ./theme-1-prog-fundamentals/pe-103-vcs-testing-debugging/01-vcs.md
[testing]: ./theme-1-prog-fundamentals/pe-103-vcs-testing-debugging/02-testing.md
[debugging]: ./theme-1-prog-fundamentals/pe-103-vcs-testing-debugging/03-debugging.md
[index]: ./index.md

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