move rust structure to mimic new utils organization #5311
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| name: Run Tests | |
| on: | |
| push: | |
| # This should disable running the workflow on tags, according to the | |
| # on.<push|pull_request>.<branches|tags> GitHub Actions docs. | |
| branches: | |
| - "*" | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| tests: | |
| name: Run Tests | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly in windows. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| include: | |
| - env_name: pyuvdata_tests_windows | |
| os: windows-latest | |
| - env_name: pyuvdata_tests_mac_arm | |
| os: macos-latest | |
| - env_name: pyuvdata_tests | |
| os: macos-13 | |
| python-version: "3.12" | |
| steps: | |
| - uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Miniforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ci/${{ matrix.env_name }}.yml | |
| activate-environment: ${{ matrix.env_name }} | |
| run-post: false | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != $PYTHON ]]; then | |
| exit 1; | |
| fi | |
| - name: Install | |
| run: | | |
| CFLAGS="-DCYTHON_TRACE=1 -DCYTHON_TRACE_NOGIL=1" pip install . | |
| - name: Run Tests | |
| run: | | |
| python -m pytest -n auto --dist=loadfile --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:./coverage.xml | |
| - uses: codecov/codecov-action@v4 | |
| if: success() | |
| with: | |
| token: ${{secrets.CODECOV_TOKEN}} #required | |
| file: ./coverage.xml #optional | |
| benchmark: | |
| name: Performance Benchmark | |
| needs: tests | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly in windows. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| python-version: ["3.12"] | |
| include: | |
| - env_name: pyuvdata_tests_windows | |
| os: windows-latest | |
| - env_name: pyuvdata_tests_mac_arm | |
| os: macos-latest | |
| - env_name: pyuvdata_tests | |
| os: macos-13 | |
| python-version: "3.12" | |
| - env_name: pyuvdata_tests | |
| os: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Minimamba | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ci/${{ matrix.env_name }}.yml | |
| activate-environment: ${{ matrix.env_name }} | |
| run-post: false | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != $PYTHON ]]; then | |
| exit 1; | |
| fi | |
| # also install benchmark utility | |
| - name: Install | |
| run: | | |
| pip install pytest-benchmark | |
| pip install . | |
| - name: Run benchmark | |
| run: | | |
| pytest --benchmark-only --benchmark-json output.json | |
| # Download previous benchmark result from cache (if exists) | |
| - name: Download previous benchmark data | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: ./cache | |
| key: ${{ matrix.os }}-benchmark | |
| # Run `github-action-benchmark` action | |
| # this step also EDITS the ./cache/benchmark-data.json file | |
| # We do not need to add output.json to the cache directory | |
| - name: Compare benchmarks | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| # What benchmark tool the output.txt came from | |
| tool: 'pytest' | |
| # Where the output from the benchmark tool is stored | |
| output-file-path: output.json | |
| # Where the previous data file is stored | |
| external-data-json-path: ./cache/benchmark-data.json | |
| # Workflow will fail when an alert happens | |
| fail-on-alert: true | |
| # Comment on the PR if the branch is not a fork | |
| comment-on-alert: true | |
| # Enable Job Summary for PRs | |
| summary-always: true | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Store benchmark results | |
| uses: actions/cache/save@v4 | |
| # only store the cache if being run on main | |
| if: github.ref == 'refs/heads/main' | |
| with: | |
| path: ./cache | |
| key: ${{ matrix.os }}-benchmark |