Releases: Rekyt/funrar
Releases · Rekyt/funrar
funrar 1.5.0
NEW FEATURES
- Added a new vignette named "other_functions" to document recently added
functions. You can access it through
vignette("other_functions", package = "funrar")
INTERNAL CHANGES
- Fix uses of the
Matrix
package for their next version - Reorganized documentation to please
goodpractice
USER-FACING CHANGES
- Remove warnings regarding relative abundances for the
distinctiveness_*()
functions as they can perfectly work with absolute abundances giving the same
results. - Fix typo in name of sparse matrices vignette.
funrar 1.2.1
- Add Authors' ORCID and all contributors;
- funrar paper is now included in DESCRIPTION, README.md and has a proper CITATIONq file;
- Fix typos in documentation;
- Transformation from tidy data.frame to sparse matrix is now possible using
stack_to_matrix(x, sparse = TRUE)
(#25); - Add a warning message when using only continuous traits with function
comput_dist_matrix()
, as it defaults to Gower's distance (#27); - Specification in help that functional distances need to be scaled between 0 and 1 prior to distinctiveness computation (#26).
funrar 1.2.0
funrar 1.2.0
- Split
rarity_dimensions()
in two more explicit functions:uniqueness_dimensions()
anddistinctiveness_dimensions()
split corresponding tests; - Add internal function to compute multiple functional distance matrix using a single trait table (
combination_trait_dist()
); distinctiveness()
now fully conserve the dimnames of the provided site-species matrix.
funrar 1.1.1
funrar 1.1.1
- Add tests for
rarity_dimensions()
; rarity_dimensions()
now comprises both Uniqueness and Distinctiveness;- Remove packages
StatMatch
,microbenchmark
&reshape2
from suggested packages.
funrar 1.1.0
- Made
make_absolute()
defunct because it was based on false assumptions and would not give back matrices of relative abundances; - Improved examples of
make_relative()
,uniqueness()
,distinctiveness()
to compute across single communities or regional pools; - Add
rarity_dimensions()
function to measure the different facets of rarity according to the trait; - Add
center
andscale
arguments incompute_dist_matrix()
to scale traits before computing distance, these arguments are sensitive to the specific distance metric used; - Use markdown with
roxygen2
to generates documentation.
v1.0.3
funrar 1.0.3
- Corrected bug so that dense matrices can be transformed to stack data frame using
matrix_to_stack()
(#19), - Updated citation for Violle et al. 2017,
- Use package
goodpractice
to enforce better code style, - Add
is_relative()
function to test if matrix contains relative abundances,scarcity()
anddistinctiveness()
now warns if it is not the case (#21), - Conditionnally use
microbenchmark
following CRAN advices.
v1.0.2
v1.0.1
v1.0.0 on CRAN
First release of the package on CRAN