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EHR write back

EHR write back #818

Workflow file for this run

# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
---
name: PR comment
on:
issue_comment:
types: [created] # only run on new comments
# https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows#issue_comment
# https://docs.github.com/en/developers/webhooks-and-events/webhooks/webhook-events-and-payloads#issue_comment
permissions:
checks: write
jobs:
pr_comment:
name: PR comment
# https://docs.github.com/en/graphql/reference/enums#commentauthorassociation
# (and https://docs.github.com/en/rest/reference/issues#comments)
# only allow commands where:
# - the comment is on a PR
# - the commenting user has write permissions (i.e. is OWNER or COLLABORATOR)
if: ${{ github.event.issue.pull_request }}
runs-on: ubuntu-latest
outputs:
command: ${{ steps.check_command.outputs.command }}
prRef: ${{ steps.check_command.outputs.prRef }}
prHeadSha: ${{ steps.check_command.outputs.prHeadSha }}
prRefId: ${{ steps.check_command.outputs.prRefId }}
branchRefId: ${{ steps.check_command.outputs.branchRefid }}
ciGitRef: ${{ steps.check_command.outputs.ciGitRef }}
makeCommand: ${{ steps.set_make_command.outputs.makeCommand }}
steps:
# Ensure we have the script file for the github-script action to use
- name: Checkout
uses: actions/checkout@v3
with:
token: ${{ secrets.FLOWEHR_REPOSITORIES_GH_TOKEN }}
fetch-depth: 0 # entire history is needed for paths filter
persist-credentials: false
# Determine whether the comment is a command
- id: check_command
name: Check for a command using GitHub script
uses: actions/github-script@v6
with:
github-token: ${{ secrets.FLOWEHR_REPOSITORIES_GH_TOKEN }}
script: |
const script = require('./.github/scripts/build.js')
await script.getCommandFromComment({core, context, github});
- name: Output PR details
run: |
echo "PR Details"
echo "=========="
echo "prRef : ${{ steps.check_command.outputs.prRef }}"
echo "prHeadSha : ${{ steps.check_command.outputs.prHeadSha }}"
echo "prRefId : ${{ steps.check_command.outputs.prRefId }}"
echo "ciGitRef : ${{ steps.check_command.outputs.ciGitRef }}"
- uses: dorny/paths-filter@v2
id: changes
with:
token: ${{ secrets.FLOWEHR_REPOSITORIES_GH_TOKEN }}
base: main
ref: ${{ steps.check_command.outputs.prHeadSha }}
filters: |
core:
- 'infrastructure/core/**'
transform:
- 'infrastructure/transform/**'
serve:
- 'infrastructure/serve/**'
apps:
- 'apps/**'
devcontainer:
- '.devcontainer/**'
- id: set_make_command
run: |
if [ ${{ steps.check_command.outputs.command }} = "test-all" ]; then
make_command="test"
elif [ ${{ steps.check_command.outputs.command }} = "destroy" ]; then
make_command="destroy"
elif [ ${{ steps.check_command.outputs.command }} = "destroy-no-terraform" ]; then
make_command="destroy-no-terraform"
elif [ ${{ steps.changes.outputs.core }} = "true" ]; then
make_command="test"
elif [ ${{ steps.changes.outputs.transform }} = "true" ] && \
[ ${{ steps.changes.outputs.serve }} = "true" ]; then
make_command="test"
elif [ ${{ steps.changes.outputs.transform }} = "true" ]; then
make_command="test-transform"
elif [ ${{ steps.changes.outputs.serve }} = "true" ]; then
make_command="test-serve"
elif [ ${{ steps.changes.outputs.apps }} = "true" ]; then
make_command="test-apps"
elif [ ${{ steps.changes.outputs.devcontainer }} = "true" ]; then
make_command="test"
else
make_command="none"
fi
echo "makeCommand=${make_command}" >> $GITHUB_OUTPUT
- name: Report check status start
if: ${{ steps.check_command.outputs.command == 'test' || steps.check_command.outputs.command == 'test-all' }}
uses: LouisBrunner/checks-action@v1.5.0
with:
token: ${{ secrets.GITHUB_TOKEN }} # Needs the auto-generated token
sha: ${{ steps.check_command.outputs.prHeadSha }}
name: "Deploy PR"
status: "in_progress"
details_url: "https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"
# If we don't run the actual deploy (see the run_test job below) we won't receive
# a check-run status, and will have to send it "manually"
- name: Bypass E2E check-runs status
if: |
(steps.check_command.outputs.command == 'test-force-approve') ||
(steps.set_make_command.outputs.makeCommand == 'none')
uses: LouisBrunner/checks-action@v1.5.0
with:
token: ${{ secrets.GITHUB_TOKEN }} # Needs the auto-generated token
# the name must be identical to the one received by the real job
sha: ${{ steps.check_command.outputs.prHeadSha }}
name: "Deploy PR"
status: "completed"
conclusion: "success"
destroy_pr_env: # Destroy all resources deployed by PR
needs: [pr_comment]
if: |
(needs.pr_comment.outputs.command == 'destroy') ||
(needs.pr_comment.outputs.command == 'destroy-no-terraform')
name: Destroy PR
uses: ./.github/workflows/devcontainer_make_command.yml
with:
suffix_override: flwr-${{ needs.pr_comment.outputs.prRefId }}
environment: infra-test
command: ${{ needs.pr_comment.outputs.makeCommand }}
sha: ${{ needs.pr_comment.outputs.prHeadSha }}
secrets: inherit
destroy_cleanup: # Clean up state and dev container if destroy successful
needs: [pr_comment, destroy_pr_env]
name: Clean-up
uses: ./.github/workflows/clean_state.yml
with:
suffix_override: flwr-${{ needs.pr_comment.outputs.prRefId }}
environment: infra-test
secrets: inherit
run_test:
needs: [pr_comment]
if: |
(needs.pr_comment.outputs.command == 'test' || needs.pr_comment.outputs.command == 'test-all') &&
(needs.pr_comment.outputs.makeCommand != 'none')
name: Deploy PR
uses: ./.github/workflows/devcontainer_make_command.yml
with:
suffix_override: flwr-${{ needs.pr_comment.outputs.prRefId }}
environment: infra-test
command: ${{ needs.pr_comment.outputs.makeCommand }}
sha: ${{ needs.pr_comment.outputs.prHeadSha }}
secrets: inherit
test_cleanup: # Clean up state and dev container if test successful
needs: [pr_comment, run_test]
name: Clean-up
uses: ./.github/workflows/clean_state.yml
with:
suffix_override: flwr-${{ needs.pr_comment.outputs.prRefId }}
environment: infra-test
secrets: inherit
summary:
name: Summary
needs: [pr_comment, run_test]
if: always() && needs.run_test.result != 'skipped' # Run even on test failure
runs-on: ubuntu-latest
environment: infra-test
steps:
# For PR builds triggered from comment builds, the GITHUB_REF is set to main
# so the checks aren't automatically associated with the PR
# If prHeadSha is specified then explicitly mark the checks for that SHA
- name: Report check status
uses: LouisBrunner/checks-action@v1.5.0
with:
token: ${{ secrets.GITHUB_TOKEN }} # Needs the auto-generated token
sha: ${{ needs.pr_comment.outputs.prHeadSha }}
name: "Deploy PR"
status: "completed"
conclusion: ${{ needs.run_test.result }}
details_url: "https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"