Update data through Vantage6 integration #13
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| # Simple workflow for updating data through Vantage6 | |
| name: Update data through Vantage6 integration | |
| on: | |
| # Allows one to run this workflow manually from the repository's 'Actions' tab | |
| workflow_dispatch: | |
| # Schedule the workflow to run every first day of January, March, May, July, September, and November at 00:00 | |
| # TODO: Uncomment the following lines to enable the schedule; and remove this TODO | |
| # schedule: | |
| # - cron: '0 0 1 */2 *' | |
| permissions: | |
| contents: write | |
| actions: write | |
| jobs: | |
| execute-vantage6-task: | |
| runs-on: [self-hosted, SURF] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Create temporary directory | |
| id: tempdir | |
| run: echo "TEMP_DIR=$(mktemp -d)" >> $GITHUB_ENV | |
| - name: Generate encryption key file | |
| run: | | |
| echo "${{ secrets.ENCRYPTION_KEY }}" > ${{ env.TEMP_DIR }}/encryption_key | |
| - name: Generate JSON configuration file | |
| run: | | |
| cat <<EOF > ${{ env.TEMP_DIR }}/config.json | |
| { | |
| "collaboration": "${{ secrets.COLLABORATION }}", | |
| "aggregating_organisation": "${{ secrets.AGGREGATING_ORGANISATION }}", | |
| "server_url": "${{ secrets.SERVER_URL }}", | |
| "server_port": "${{ secrets.SERVER_PORT }}", | |
| "server_api": "${{ secrets.SERVER_API }}", | |
| "username": "${{ secrets.SERVICE_ACCOUNT }}", | |
| "password": "${{ secrets.SERVICE_PASSWORD }}", | |
| "organization_key": "${{ env.TEMP_DIR }}/encryption_key" | |
| } | |
| EOF | |
| - name: Install dependencies | |
| run: pip install -r scripts/requirements.txt | |
| - name: Run Vantage6 Python script with timeout | |
| run: python scripts/vantage6_integration.py '${{ env.TEMP_DIR }}/config.json' plotting_info.json > /dev/null 2>&1 | |
| timeout-minutes: 10 | |
| env: | |
| CONFIG_PATH: ${{ env.TEMP_DIR }}/config.json | |
| - name: Cleanup temporary directory | |
| if: always() | |
| run: rm -rf ${{ env.TEMP_DIR }} | |
| - name: Get repository name | |
| id: repo | |
| run: echo "REPO_NAME=${GITHUB_REPOSITORY}" >> $GITHUB_ENV | |
| - name: Set raw path URL | |
| run: echo "RAW_PATH=https://raw.githubusercontent.com/${{ env.REPO_NAME }}/main/" >> $GITHUB_ENV | |
| - name: Run Flashcard Construction Python script | |
| run: python scripts/construct_flashcard.py federated-non-expert-info-portal/data/raw/vantage6_result.json plotting_info.json "${{ env.RAW_PATH }}" | |
| - name: Configure Git | |
| run: | | |
| git config --global user.email "${{ github.actor }}@users.noreply.github.com" | |
| git config --global user.name "${{ github.actor }}" | |
| - name: Commit and push if there are changes | |
| run: | | |
| git add data/* | |
| git commit -m "Add/update Vantage6 result" || exit 0 # Exit gracefully if no changes | |
| git push | |
| - name: Run Datawrapper script | |
| run: python scripts/datawrapper.py "${{ secrets.DATAWRAPPER_TOKEN }}" plotting_info.json |