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Schapiro Lab

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  1. histoCAT histoCAT Public

    Histology Topography Cytometry Analysis Toolbox

    MATLAB 64 23

  2. micronuclAI micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    Python 6

  3. Background_subtraction Background_subtraction Public

    Background subtraction for COMET platform

    Python 5 3

  4. multiplex_macsima multiplex_macsima Public

    utitilies for macsima image sets

    Python 2 1

  5. mi_spatialomics mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    Jupyter Notebook 2 1

  6. Segmentation_prep Segmentation_prep Public

    Image preprocessing for different segmentation approaches.

    Python 2

Repositories

Showing 10 of 36 repositories
  • micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    SchapiroLabor/micronuclAI’s past year of commit activity
    Python 6 AGPL-3.0 0 0 0 Updated Sep 20, 2024
  • Segmentation_prep Public

    Image preprocessing for different segmentation approaches.

    SchapiroLabor/Segmentation_prep’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 17, 2024
  • nf-core-test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with nf-core pipelines hosted on SchapiroLabor

    SchapiroLabor/nf-core-test-datasets’s past year of commit activity
    0 MIT 337 0 0 Updated Sep 7, 2024
  • mcmicro Public Forked from labsyspharm/mcmicro

    Multiple-choice microscopy pipeline

    SchapiroLabor/mcmicro’s past year of commit activity
    Nextflow 0 MIT 59 0 0 Updated Sep 6, 2024
  • projectionpursuit Public Forked from cellsignal/projectionpursuit

    projection pursuit clustering

    SchapiroLabor/projectionpursuit’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Aug 28, 2024
  • mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    SchapiroLabor/mi_spatialomics’s past year of commit activity
    Jupyter Notebook 2 MIT 1 3 0 Updated Aug 25, 2024
  • phenoimager2mc Public

    Formatting tif/ome-tif metadata for MCMICRO staging modules

    SchapiroLabor/phenoimager2mc’s past year of commit activity
    Jupyter Notebook 0 AGPL-3.0 0 0 0 Updated Aug 9, 2024
  • mask2bbox Public

    Useful tools for converting segmentation masks into bounding box objects.

    SchapiroLabor/mask2bbox’s past year of commit activity
    Python 2 AGPL-3.0 0 0 0 Updated Aug 9, 2024
  • imc2mc Public

    staging of imc images for mcmicro

    SchapiroLabor/imc2mc’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Aug 8, 2024
  • stardist Public Forked from stardist/stardist

    StarDist - Object Detection with Star-convex Shapes

    SchapiroLabor/stardist’s past year of commit activity
    Python 0 BSD-3-Clause 218 0 0 Updated Aug 8, 2024
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