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docs: fix external references
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avik-pal committed Oct 3, 2024
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23 changes: 12 additions & 11 deletions docs/src/basics/autodiff.md
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Expand Up @@ -8,24 +8,25 @@

## Summary of Finite Differencing Backends

- [`AutoFiniteDiff`](@extref ADTypes): Finite differencing using `FiniteDiff.jl`, not
optimal but always applicable.
- [`AutoFiniteDifferences`](@extref ADTypes): Finite differencing using
`FiniteDifferences.jl`, not optimal but always applicable.
- [`AutoFiniteDiff`](@extref ADTypes.AutoFiniteDiff): Finite differencing using
`FiniteDiff.jl`, not optimal but always applicable.
- [`AutoFiniteDifferences`](@extref ADTypes.AutoFiniteDifferences): Finite differencing
using `FiniteDifferences.jl`, not optimal but always applicable.

## Summary of Forward Mode AD Backends

- [`AutoForwardDiff`](@extref ADTypes): The best choice for dense problems.
- [`AutoPolyesterForwardDiff`](@extref ADTypes): Might be faster than
[`AutoForwardDiff`](@extref ADTypes) for large problems. Requires
- [`AutoForwardDiff`](@extref ADTypes.AutoForwardDiff): The best choice for dense
problems.
- [`AutoPolyesterForwardDiff`](@extref ADTypes.AutoPolyesterForwardDiff): Might be faster
than [`AutoForwardDiff`](@extref ADTypes.AutoForwardDiff) for large problems. Requires
`PolyesterForwardDiff.jl` to be installed and loaded.

## Summary of Reverse Mode AD Backends

- [`AutoZygote`](@extref ADTypes): The fastest choice for non-mutating array-based (BLAS)
functions.
- [`AutoEnzyme`](@extref ADTypes): Uses `Enzyme.jl` Reverse Mode and works for both
in-place and out-of-place functions.
- [`AutoZygote`](@extref ADTypes.AutoZygote): The fastest choice for non-mutating
array-based (BLAS) functions.
- [`AutoEnzyme`](@extref ADTypes.AutoEnzyme): Uses `Enzyme.jl` Reverse Mode and works for
both in-place and out-of-place functions.

!!! tip

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2 changes: 1 addition & 1 deletion docs/src/tutorials/code_optimization.md
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Expand Up @@ -90,7 +90,7 @@ end

Allocations are only expensive if they are “heap allocations”. For a more in-depth
definition of heap allocations,
[there are many sources online](http://net-informations.com/faq/net/stack-heap.htm).
[there are many sources online](https://net-informations.com/faq/net/stack-heap.htm).
But a good working definition is that heap allocations are variable-sized slabs of memory
which have to be pointed to, and this pointer indirection costs time. Additionally, the heap
has to be managed, and the garbage controllers has to actively keep track of what's on the
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9 changes: 5 additions & 4 deletions docs/src/tutorials/large_systems.md
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Expand Up @@ -162,10 +162,11 @@ sparse differentiation!

One of the useful companion tools for NonlinearSolve.jl is
[ADTypes.jl](https://github.com/SciML/ADTypes.jl) that specifies the interface for sparsity
detection via [`jacobian_sparsity`](@extref ADTypes). This allows for automatic
declaration of Jacobian sparsity types. To see this in action, we can give an example `du`
and `u` and call `jacobian_sparsity` on our function with the example arguments, and it will
kick out a sparse matrix with our pattern, that we can turn into our `jac_prototype`.
detection via [`jacobian_sparsity`](@extref ADTypes.jacobian_sparsity). This allows for
automatic declaration of Jacobian sparsity types. To see this in action, we can give an
example `du` and `u` and call `jacobian_sparsity` on our function with the example
arguments, and it will kick out a sparse matrix with our pattern, that we can turn into our
`jac_prototype`.

!!! tip

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2 changes: 1 addition & 1 deletion src/algorithms/extension_algs.jl
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Expand Up @@ -317,7 +317,7 @@ NLSolversJL(; method, autodiff = nothing) = NLSolversJL(method, autodiff)
SpeedMappingJL(; σ_min = 0.0, stabilize::Bool = false, check_obj::Bool = false,
orders::Vector{Int} = [3, 3, 2], time_limit::Real = 1000)
Wrapper over [SpeedMapping.jl](https://nicolasl-s.github.io/SpeedMapping.jl) for solving
Wrapper over [SpeedMapping.jl](https://nicolasl-s.github.io/SpeedMapping.jl/) for solving
Fixed Point Problems. We allow using this algorithm to solve root finding problems as well.
### Keyword Arguments
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