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Cf cell method #5224

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merged 9 commits into from
Apr 4, 2023
Merged

Cf cell method #5224

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fc70730
CellMethods printed in more CF-compliant manner
HGWright Mar 31, 2023
595bda3
Removing extra commented code
HGWright Mar 31, 2023
d3a8180
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 31, 2023
8e47e93
Merge branch 'main' of github.com:SciTools/iris into cf_cell_method
HGWright Mar 31, 2023
367aade
fixing pre-commit failure
HGWright Mar 31, 2023
a93e01c
Merge branch 'main' of github.com:SciTools/iris into cf_cell_method
HGWright Apr 3, 2023
fa042fa
Changes requested in review
HGWright Apr 3, 2023
477e2b7
Merge branch 'cf_cell_method' of github.com:HGWright/iris into cf_cel…
HGWright Apr 3, 2023
577787d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 3, 2023
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2 changes: 1 addition & 1 deletion docs/src/further_topics/metadata.rst
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Expand Up @@ -120,7 +120,7 @@ For example, given the following :class:`~iris.cube.Cube`,
forecast_reference_time 1859-09-01 06:00:00
height 1.5 m
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
Attributes:
Conventions 'CF-1.5'
Model scenario 'A1B'
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24 changes: 12 additions & 12 deletions docs/src/further_topics/ugrid/operations.rst
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Expand Up @@ -566,8 +566,8 @@ Here's another example using a global cubed-sphere data set:
Auxiliary coordinates:
time x -
Cell methods:
mean time (300 s)
mean time_counter
0 time: mean: (interval: 300 s)
1 time_counter: mean
Attributes:
Conventions UGRID
description Created by xios
Expand Down Expand Up @@ -687,7 +687,7 @@ mesh, we then reconstruct a :class:`~iris.experimental.ugrid.Mesh` from the
Auxiliary coordinates:
time x -
Cell methods:
point time
0 time: point
Attributes:
Conventions UGRID
description Created by xios
Expand Down Expand Up @@ -744,7 +744,7 @@ mesh, we then reconstruct a :class:`~iris.experimental.ugrid.Mesh` from the
Auxiliary coordinates:
time x -
Cell methods:
point time
0 time: point
Attributes:
Conventions UGRID
description Created by xios
Expand Down Expand Up @@ -815,8 +815,8 @@ with the
Auxiliary coordinates:
time x -
Cell methods:
mean time (300 s)
mean time_counter
0 time: mean: (interval: 300 s)
1 time_counter: mean
Attributes:
Conventions UGRID
description Created by xios
Expand Down Expand Up @@ -851,8 +851,8 @@ with the
Auxiliary coordinates:
time x - -
Cell methods:
mean time (300 s)
mean time_counter
0 time: mean: (interval: 300 s)
1 time_counter: mean
Attributes:
Conventions UGRID
description Created by xios
Expand Down Expand Up @@ -894,8 +894,8 @@ previously initialised regridder:
Auxiliary coordinates:
time x -
Cell methods:
mean time (300 s)
mean time_counter
0 time: mean: (interval: 300 s)
1 time_counter: mean
Attributes:
Conventions UGRID
description Created by xios
Expand All @@ -917,8 +917,8 @@ previously initialised regridder:
Auxiliary coordinates:
time x - -
Cell methods:
mean time (300 s)
mean time_counter
0 time: mean: (interval: 300 s)
1 time_counter: mean
Attributes:
Conventions UGRID
description Created by xios
Expand Down
12 changes: 6 additions & 6 deletions docs/src/further_topics/ugrid/other_meshes.rst
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Expand Up @@ -44,8 +44,8 @@ as the **nodes** when creating the Iris
latitude - x
longitude - x
Cell methods:
mean where sea area
mean time
0 area: mean where sea
1 time: mean
Attributes:
grid 'FESOM 1.4 (unstructured grid in the horizontal with 126859 wet nodes;...
...
Expand Down Expand Up @@ -77,8 +77,8 @@ as the **nodes** when creating the Iris
latitude - x
longitude - x
Cell methods:
mean where sea area
mean time
0 area: mean where sea
1 time: mean
Attributes:
grid 'FESOM 1.4 (unstructured grid in the horizontal with 126859 wet nodes;...
...
Expand Down Expand Up @@ -275,7 +275,7 @@ dimensions into a single mesh dimension. Since Iris cubes don't support a "resh
depth 4.999938 m, bound=(0.0, 10.0) m
time 0001-01-01 12:00:00
Cell methods:
mean time
0 time: mean
Attributes:
Conventions 'CF-1.5'

Expand Down Expand Up @@ -350,7 +350,7 @@ dimensions into a single mesh dimension. Since Iris cubes don't support a "resh
name unknown
location face
Cell methods:
mean time
0 time: mean
Attributes:
Conventions 'CF-1.5'

Expand Down
12 changes: 6 additions & 6 deletions docs/src/userguide/cube_statistics.rst
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Expand Up @@ -86,7 +86,7 @@ we can pass the coordinate name and the aggregation definition to the
model_level_number 10, bound=(1, 19)
sigma 0.92292976, bound=(0.8458596, 1.0)
Cell methods:
mean model_level_number
0 model_level_number: mean
Attributes:
STASH m01s00i004
source 'Data from Met Office Unified Model'
Expand Down Expand Up @@ -145,7 +145,7 @@ These areas can now be passed to the ``collapsed`` method as weights:
grid_longitude 358.74948 degrees, bound=(357.48724, 360.01172) degrees
surface_altitude 399.625 m, bound=(-14.0, 813.25) m
Cell methods:
mean grid_longitude, grid_latitude
0 grid_longitude: grid_latitude: mean
Attributes:
STASH m01s00i004
source 'Data from Met Office Unified Model'
Expand Down Expand Up @@ -193,7 +193,7 @@ the units of the resulting cube are multiplied by an area unit:
grid_longitude 358.74948 degrees, bound=(357.48724, 360.01172) degrees
surface_altitude 399.625 m, bound=(-14.0, 813.25) m
Cell methods:
sum grid_longitude, grid_latitude
0 grid_longitude: grid_latitude: sum
Attributes:
STASH m01s00i004
source 'Data from Met Office Unified Model'
Expand Down Expand Up @@ -276,7 +276,7 @@ Printing this cube now shows that two extra coordinates exist on the cube:
Scalar coordinates:
forecast_period 0 hours
Cell methods:
mean month, year
0 month: year: mean
Attributes:
Conventions 'CF-1.5'
STASH m01s00i024
Expand Down Expand Up @@ -418,8 +418,8 @@ The following example shows a weighted sum (notice the change of the units):
Scalar coordinates:
forecast_period 0 hours
Cell methods:
mean month, year
sum clim_season
0 month: year: mean
1 clim_season: sum
Attributes:
Conventions 'CF-1.5'
STASH m01s00i024
8 changes: 4 additions & 4 deletions docs/src/userguide/interpolation_and_regridding.rst
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Expand Up @@ -75,8 +75,8 @@ Let's take the air temperature cube we've seen previously:
pressure 1000.0 hPa
time 1998-12-01 00:00:00, bound=(1994-12-01 00:00:00, 1998-12-01 00:00:00)
Cell methods:
mean within years time
mean over years time
0 time: mean within years
1 time: mean over years
Attributes:
STASH m01s16i203
source 'Data from Met Office Unified Model'
Expand All @@ -94,8 +94,8 @@ We can interpolate specific values from the coordinates of the cube:
pressure 1000.0 hPa
time 1998-12-01 00:00:00, bound=(1994-12-01 00:00:00, 1998-12-01 00:00:00)
Cell methods:
mean within years time
mean over years time
0 time: mean within years
1 time: mean over years
Attributes:
STASH m01s16i203
source 'Data from Met Office Unified Model'
Expand Down
2 changes: 1 addition & 1 deletion docs/src/userguide/loading_iris_cubes.rst
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Expand Up @@ -234,7 +234,7 @@ A single cube is loaded in the following example::
longitude - x
...
Cell methods:
mean time
0 time: mean

However, when attempting to load data which would result in anything other than
one cube, an exception is raised::
Expand Down
9 changes: 4 additions & 5 deletions lib/iris/_representation/cube_summary.py
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Expand Up @@ -265,12 +265,11 @@ def __init__(self, title, cell_methods):
self.values = []
self.contents = []
for method in cell_methods:
name = method.method
# Remove "method: " from the front of the string, leaving the value.
value = str(method)[len(name + ": ") :]
self.names.append(name)
index = str(cell_methods.index(method))
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value = str(method)
self.names.append(index)
self.values.append(value)
content = "{}: {}".format(name, value)
content = "{}: {}".format(index, value)
self.contents.append(content)


Expand Down
14 changes: 7 additions & 7 deletions lib/iris/common/resolve.py
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Expand Up @@ -144,7 +144,7 @@ class Resolve:
forecast_reference_time 1859-09-01 06:00:00
height 1.5 m
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
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Attributes:
Conventions 'CF-1.5'
Model scenario 'A1B'
Expand All @@ -162,7 +162,7 @@ class Resolve:
height 1.5 m
time 1860-06-01 00:00:00, bound=(1859-12-01 00:00:00, 1860-12-01 00:00:00)
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
Attributes:
Conventions 'CF-1.5'
Model scenario 'E1'
Expand All @@ -185,7 +185,7 @@ class Resolve:
forecast_reference_time 1859-09-01 06:00:00
height 1.5 m
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
Attributes:
Conventions 'CF-1.5'
STASH m01s03i236
Expand Down Expand Up @@ -2542,7 +2542,7 @@ def mapped(self):
forecast_reference_time 1859-09-01 06:00:00
height 1.5 m
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
Attributes:
Conventions 'CF-1.5'
Model scenario 'A1B'
Expand All @@ -2559,7 +2559,7 @@ def mapped(self):
height 1.5 m
time 1860-06-01 00:00:00, bound=(1859-12-01 00:00:00, 1860-12-01 00:00:00)
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
Attributes:
Conventions 'CF-1.5'
Model scenario 'E1'
Expand Down Expand Up @@ -2610,7 +2610,7 @@ def shape(self):
forecast_reference_time 1859-09-01 06:00:00
height 1.5 m
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
Attributes:
Conventions 'CF-1.5'
Model scenario 'A1B'
Expand All @@ -2627,7 +2627,7 @@ def shape(self):
height 1.5 m
time 1860-06-01 00:00:00, bound=(1859-12-01 00:00:00, 1860-12-01 00:00:00)
Cell methods:
mean time (6 hour)
0 time: mean: (interval: 6 hour)
Attributes:
Conventions 'CF-1.5'
Model scenario 'E1'
Expand Down
29 changes: 15 additions & 14 deletions lib/iris/coords.py
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Expand Up @@ -3078,23 +3078,24 @@ def __init__(self, method, coords=None, intervals=None, comments=None):
def __str__(self):
"""Return a custom string representation of CellMethod"""
# Group related coord names intervals and comments together
cell_components = zip_longest(
self.coord_names, self.intervals, self.comments, fillvalue=""
coord_string = " ".join([f"{coord}:" for coord in self.coord_names])
method_string = f"{str(self.method)}"
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interval_string = " ".join(
[f"interval: {interval}" for interval in self.intervals]
)

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collection_summaries = []
cm_summary = "%s: " % self.method

for coord_name, interval, comment in cell_components:
other_info = ", ".join(filter(None, chain((interval, comment))))
if other_info:
coord_summary = "%s (%s)" % (coord_name, other_info)
else:
coord_summary = "%s" % coord_name

collection_summaries.append(coord_summary)
if interval_string:
comment_string = "".join(
[f" comment: {comment}" for comment in self.comments]
)
cm_summary = f"{coord_string} {method_string}: ({interval_string}{comment_string})"
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elif len(self.comments) > 0:
comment_string = " ".join([comment for comment in self.comments])
cm_summary = f"{coord_string} {method_string}: ({comment_string})"
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else:
cm_summary = f"{coord_string} {method_string}"

return cm_summary + ", ".join(collection_summaries)
return cm_summary

def __add__(self, other):
# Disable the default tuple behaviour of tuple concatenation
Expand Down
18 changes: 9 additions & 9 deletions lib/iris/cube.py
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Expand Up @@ -788,8 +788,8 @@ class Cube(CFVariableMixin):
time \
1998-12-01 00:00:00, bound=(1994-12-01 00:00:00, 1998-12-01 00:00:00)
Cell methods:
mean within years time
mean over years time
0 time: mean within years
1 time: mean over years
Attributes:
STASH m01s16i203
source 'Data from Met Office Unified Model'
Expand Down Expand Up @@ -3775,8 +3775,8 @@ def collapsed(self, coords, aggregator, **kwargs):
longitude \
180.0 degrees, bound=(0.0, 360.0) degrees
Cell methods:
mean month, year
mean longitude
0 month: year: mean
1 longitude: mean
Attributes:
Conventions 'CF-1.5'
STASH m01s00i024
Expand Down Expand Up @@ -4040,8 +4040,8 @@ def aggregated_by(
Scalar coordinates:
forecast_period 0 hours
Cell methods:
mean month, year
mean year
0 month: year: mean
1 year: mean
Attributes:
Conventions 'CF-1.5'
STASH m01s00i024
Expand Down Expand Up @@ -4349,7 +4349,7 @@ def rolling_window(self, coord, aggregator, window, **kwargs):
forecast_reference_time 2011-07-23 00:00:00
realization 10
Cell methods:
mean time (1 hour)
0 time: mean: (interval: 1 hour)
Attributes:
STASH m01s00i024
source \
Expand All @@ -4374,8 +4374,8 @@ def rolling_window(self, coord, aggregator, window, **kwargs):
forecast_reference_time 2011-07-23 00:00:00
realization 10
Cell methods:
mean time (1 hour)
mean time
0 time: mean: (interval: 1 hour)
1 time: mean
Attributes:
STASH m01s00i024
source \
Expand Down
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