Shuhua-Group
- 61 followers
- Shanghai, China
- https://pog.fudan.edu.cn
- xushua@fudan.edu.cn
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Repositories
- AncestryPainterV2 Public
An updated version of AncestryPainterV1, a graphing tool to display ancestry composition and genetic difference.
Shuhua-Group/AncestryPainterV2’s past year of commit activity - CPC-graph-based-NGS-pipeline Public
A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
Shuhua-Group/CPC-graph-based-NGS-pipeline’s past year of commit activity - CHIP-mutation-calling-NGS-pipeline Public
This pipeline based on snakemake calls CHIP variants from next-generation whole-exome/genome sequencing of human samples and produces a purely filtered VCF file containing high confident CHIP mutations.
Shuhua-Group/CHIP-mutation-calling-NGS-pipeline’s past year of commit activity - Genetic-characteristics-of-the-Han100K-initiative Public
We calculated pairwise FST and Ancestry components for each provincial population.
Shuhua-Group/Genetic-characteristics-of-the-Han100K-initiative’s past year of commit activity - Calculate.genetic.distance Public
This script can calculate the genetic distances of given variants based on their physical positions and genetic map files.
Shuhua-Group/Calculate.genetic.distance’s past year of commit activity - SVanalysis_STARProtocols Public
A protocol for applying low-coverage whole-genome sequencing data in structure variation studies
Shuhua-Group/SVanalysis_STARProtocols’s past year of commit activity
