Skip to content

Firebase cloud hosting infrastructure for the ENGAGE-HF project.

License

Notifications You must be signed in to change notification settings

StanfordBDHG/ENGAGE-HF-Firebase

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

81 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

ENGAGE-HF Firebase

Build and Test Deployment

Firebase cloud hosting infrastructure for the ENGAGE-HF project.

Behavior

The base functionality of the ENGAGE-HF Firebase Functions revolve around three parts:

  • recommending medication changes to patients based on existing medication, vitals and symptom scores
  • calculating symptom scores from questionnaire responses of patients
  • generating Health Summary PDFs containing recommendations, vitals and symptom scores

Health Summary Generation

Health Summary PDFs contain four sections:

  • Medications & Recommendations
  • Vital Summary containing only the most important vitals
  • Symptom Score Report including a speedometer displaying the current score in relation to the previous one and a baseline, a table with the most recent symptom score results and a small personal summary
  • Detailed Vitals Page with graphs displaying body weight, heart rate and blood pressure measurements and important key figures

Recommendation Algorithms

ENGAGE-HF uses four different algorithms to recommend medication changes based on existing medication, vitals and symptom scores. Each recommendation algorithm corresponds to a medication class (Beta blockers, MRA, SGLT2i) or a group of medication classes (RASI including ACEI, ARB and ARNI).

  • Note 1: This codebase contains five different recommender types, including one for diuretics. The diurectics recommender simply recommends staying on the existing medication and assumes that medication to already be at the personal target dose.
  • Note 2: The algorithms are only expected to be run with one medication per class, not multiple different medications in one class.

ENGAGE-HF utilizes four algorithms to recommend medication adjustments based on a patient's current medications, vital signs, and symptom scores. Each algorithm is tailored to a specific medication class — Beta-blockers, MRAs, and SGLT2 inhibitors — or a combination of classes, such as RASI (including ACEIs, ARBs, and ARNIs).

Notes:

  • The codebase includes an additional recommender for diuretics, making a total of five recommenders. The diuretics recommender simply advises maintaining the current medication, assuming it is already at the patient’s personal target dose.
  • The algorithms are designed to handle one medication per class, not multiple medications within the same class.

Beta Blockers

Beta Blockers

Depending on contraindications entered on the Web Dashboard, a different medication is listed in the following order:

  • Carvedilol
  • Metoprolol Succinate
  • Bisoprolol

RASI

RASI RASI RASI

MRA

MRA

Depending on contraindications entered on the Web Dashboard, a different medication is listed in the following order:

  • Spironolactone
  • Eplerenone

SGLT2i

SGLT2i

Depending on contraindications entered on the Web Dashboard, a different medication is listed in the following order:

  • Empagliflozin
  • Dapagliflozin
  • Sotagliflozin

Contraindications

Contraindications are handled using FHIR AllergyIntolerance resources found in the users/$userId$/allergyIntolerances collections. In the code property, we use RxNorm codes as described in functions/src/tests/resources/contraindications.csv for the different medications. Depending on the type and criticality properties, we identify each allergy as one of the following:

  • Severe Allergy (for type allergy and criticality high)
  • Allergy (for type allergy and criticality not high)
  • Intolerance (for type intolerance)
  • Financial (for non-standard type financial)

In the file, we also describe how each of these cases relate to which medications are taken out of the recommendable options.

Symptom Score Calculation

The Kansas City Cardiomyopathy Questionnaire-12 (KCCQ-12) score assesses a patient’s physical limitations, symptom frequency, quality of life, and social limitations. Scores are normalized to a 0-100 scale, where higher values indicate better health status. ENGAGE-HF further adds one additional question about dizziness to the questionnaire used in the application.

Physical Limitations

Questions 1a, 1b, and 1c assess physical limitations. Responses are scored from 1 to 6, where:

  • 1 indicates severe limitations.
  • 5 indicates minimal limitations.
  • 6 indicates "Does not apply" (excluded from scoring).

The Physical Limitations score is the average of the applicable responses, normalized to a 0-100 scale. If fewer than two responses are valid, the score cannot be calculated.

Symptom Frequency

Questions 2, 3, 4, and 5 evaluate symptom frequency, with responses scored from:

  • 1 to 4 for Questions 2 and 5.
  • 1 to 7 for Questions 3 and 4.

Each response is normalized to a 0-100 scale. The Symptom Frequency score is the average of these normalized values.

Quality of Life

Questions 6 and 7 measure quality of life, with responses scored from 1 to 4, where lower scores indicate worse quality of life. These scores are normalized to a 0-100 scale, and their average forms the Quality of Life score.

Social Limitations

Questions 8a, 8b, and 8c address social limitations, scored similarly to the Physical Limitations questions (1 to 6 scale, excluding "Does not apply"). The Social Limitations score is the average of the applicable responses, normalized to 0-100, provided at least two valid responses are available.

Clinical Summary & Overall

The Clinical Summary Score is the average of the Physical Limitations and Symptom Frequency scores, whereas the Overall Total Score is calculated as the average of all four above-mentioned domain scores.

Dizziness

In addition to the KCCQ-12 questions, ENGAGE-HF uses question 9 to ask the patient about dizziness. Its responses are encoded as integers between 1 and 5.

Data Scheme

This document describes how data is stored in Firestore for the Engage-HF app.

Custom Types

The following section describes custom types defined for this system to be later used

LocalizedText

A LocalizedText object shall be used whenever text requires localization or may require in the future. The object may either simply be a single string (in the case of localizations not being available yet) or a dictionary with string keys and string values. If LocalizedText is represented by a string-string dictionary, the keys represent language-codes following the ISO 639-1 (or if necessary ISO 639-2) standard and the respective text in the given language as value.

Some localizations may require to include regions as well (e.g. Australian/British/American English), so the clients should be aware of this and prioritize the language code with the correct region (en-us) over the general code (en), if it is present.

A LocalizedText object cannot be used in FHIR-conforming types due to its incompatibility with the standard. FHIR types commonly contain text in one language only to be specified using the language property.

Example

{
	"en":"Welcome to the Engage-HF app!",
	"de":"Willkommen in der Engage-HF App!",
	"es":"¡Bienvenido a la aplicación Engage-HF!"
}

invitations/$invitationId$

When a user joins Engage-HF, we first create an invitation code on demand of an operator of the web dashboard.

For patients, upon entering the invitation code using an anonymous login, the userId is set. After successful registration, the user object will be fully created and the invitation is removed from this collection.

For SSO users (e.g. clinicians,owners), upon the first login using SSO, the related invitation is fetched, the user object will be fully created and the invitation is removed from this collection.

Property Type Values Comments
code string e.g. 'PAULPAUL' An 8-digit invitation code or SSO email address.
userId optional string - The userId associated with the invitation. This is set when an anonymous user has entered an invitation code, but has not used a proper account to log in yet.
auth optional Auth Authentication information to be set when redeeming invitation. Will no longer be set once invitation has been redeemed.
auth>displayName optional string Display name for the user.
auth>email optional string E-Mail address of the user.
auth>phoneNumber optional string Phone number of the user.
auth>photoURL optional string URL for a photo of the user.
user optional User See users/$userId$ for full specification. Will no longer be set once invitation has been redeemed.

medications

In this section, we describe information regarding all the medications to be specified in the Engage-HF context. These medications may be used by a clinician for medication requests to a patient (users/$userId$/medicationRequests) or contra-indications (users/$userId$/allergyIntolerances). The medications are generated from functions/data/medicationCodes.json file containing medications (incl. respective RxNorm SCD type codes) grouped by medication classes.

medications/$medicationId$

Based on FHIR Medication, the following properties may be used, while additional properties are ignored by the Engage-HF system.

Property Type Values Comments
id string - Resource: Logical id of this artifact
code FHIRCodeableConcept - FHIRCodeableConcept containing an RxNorm code of the IN/MIN type, a display name and the RxNorm system url.
extension list of Extension - See /medications/$medicationId$/extension for possible values

Based on the Extension format specified in FHIR, a medication may contain a list of these following extension properties. Each property will need to get a url assigned to fit the FHIR data format.

Property Type Values Comments
medicationClass string - A medicationClassId referring to a medicationClass specified in /medicationClasses/$medicationClassId$. One medication object may contain multiple medicationClass extension properties.
minimumDailyDose SimpleQuantity - Unit: mg/day. Occurs exactly once. Multi-ingredient tablets contain an array of double rather than a double.
targetDailyDose SimpleQuantity - Unit: mg/day. Occurs exactly once. Multi-ingredient tablets contain an array of double rather than a double.

medications/$medicationId$/drugs/$drugId$

Property Type Values Comments
id string - Resource: Logical id of this artifact
code FHIRCodeableConcept - FHIRCodeableConcept containing an RxNorm code of the SCD type, a display name and the RxNorm system url.
ingredient list of Ingredient - Use references to medications and strength for quantity information.
ingredient[x]>itemCodeableConcept FHIRCodeableConcept - FHIRCodeableConcept containing an RxNorm code of the IN type, a display name and the RxNorm system url.
ingredient[x]>strength Ratio - Uses "mg" as numerator unit, no denominator unit and denominator value is always 1.

medicationClasses/$medicationClassId$

Property Type Values Comments
id string - -
name LocalizedText - A name for a given medicationClass to be displayed to a user.
videoPath string e.g. "/videoSectionId/1/videos/2" The path to retrieve the respective video from Firestore.

organizations/$organizationId$

Property Type Values Comments
name string e.g. "Stanford University" -
contactName string e.g. "Alex Sandhu, MD" -
phoneNumber string e.g. "(650) 493-5000" -
emailAddress string e.g. "dothfteam@stanford.edu" -
ssoProviderId string - The providerId as used for single sign-on.

questionnaires

In this section, we describe all the information stored for questionnaires.

questionnaires/$questionnaireId$

Based on FHIR Questionnaire, the following properties may be used, while additional properties are ignored by the Engage-HF system.

Property Type Values Comments
id string - Resource: Logical id of this artifact
meta Meta - Resource: Metadata about the resource
identifier list of Identifier - Business identifier for this questionnaire. There may be multiple questionnaire objects in this list, with differing id and language properties, but a common business identifier.
title string - Human-friendly title of the questionnaire.
date Date - last modified date
version string - Business version of the questionnaire.
language optional string e.g. "en" Following IETF BCP-47 / FHIR ValueSet languages
item list of BackboneElement - items as defined in FHIR Questionnaire
item[x]>linkId string - Unique id for item in questionnaire
item[x]>definition optional uri - Details for the item
item[x]>prefix optional string e.g. "1(a)", "2.5.3" Prefix of the item that isn't actually part of the name but may still be displayed.
item[x]>text string - Primary text for the item
item[x]>type code e.g. "group", "display", "boolean", "decimal", "integer", "date", etc See QuestionnaireItemType for available values.

You can find an example KCCQ-12 questionnaire in functions/data/questionnaires.json.

users/$userId$

In this section, we describe all user-related data to be stored. The security rules shall be set up in a way to only allow for a patient to access its own information and a clinician to access all patients' information (or even more restrictive, if needed).

Property Type Values Comments
type string e.g. "admin", "owners", "clinician", "patient" The type of the user.
dateOfEnrollment Date - The date when the invitation code was used to create this user.
dateOfBirth optional Date - The date when the user was born.
genderIdentity optional string "female","male","transgender","nonBinary","preferNotToState" The gender identity chosen when a patient redeemed the invitation.
organization optional string - The id of the organization a clinician, patient or owner is associated with.
invitationCode string - The invitationCode to be used when logging in to the app for the first time.
language optional string e.g. "en" Following IETF BCP-47 / FHIR ValueSet languages.
receivesAppointmentReminders optional boolean true, false Decides whether to send out appointment reminders one day before each appointment.
receivesInactivityReminders optional boolean true, false Decides whether to send updates about inactivity.
receivesMedicationUpdates optional boolean true, false Decides whether to send updates about current medication changes.
receivesQuestionnaireReminders optional boolean true, false Decides whether to send reminders about filling out their questionnaire every 14 days.
receivesRecommendationUpdates optional boolean true, false Decides whether to send updates about recommended medication changes.
receivesVitalsReminders optional boolean true, false Decides whether to send reminders about measuring vitals.
receivesWeightAlerts optional boolean true, false Decides whether to send out alerts when drastic weight changes are observed.
timeZone string e.g. "America/Los_Angeles" The value needs to correspond to an identifier from TZDB. It must not be an offset to UTC/GMT, since that wouldn't work well with daylight-savings (even if there is no daylight-savings time at that location). Also, don't use common abbreviations like PST, PDT, CEST, etc (they may be ambiguous, e.g. CST). If the timeZone is unknown, then "America/Los_Angeles" should be used.

users/$userId$/devices/$deviceId$

This data is required to send push notifications over the Firebase Cloud Messaging System.

Property Type Values Comments
modifiedDate Date - This date is updated whenever the token is sent to the server, even if it is not replaced by a different token. It simply reflects the last date we can definitely confirm the token was active. Idea: We may ignore some devices, if the token has not been updated for a long time, since the app has not been opened for a long time.
notificationToken string - The FCM token as received from Firebase in the app.
platform optional string e.g. "iOS", "Android" This information is important as context for the osVersion, appVersion and appBuild properties.
osVersion optional string e.g. "17.5.1" The version of the OS. Depending on the OS, they may have different formats to be specified separately.
appVersion optional string e.g. "1.0.1" The version of the app as it is specified on the App/Play Store.
appBuild optional string e.g. "56" The build version of the app as defined by the CI pipeline releasing the app.
language optional string e.g. "en" Following IETF BCP-47 / FHIR ValueSet languages

Push notifications over APNS / FCM only contain text in a single language. For this, the device's language property shall be prioritized, falling back on the user's language property and using US-English if both are not present.

Adding a new device or modifying information of an existing one

A device can only be identified by its notification token. When updating a device's information, we therefore check if the notification token already exists in Firestore. If it already exists, we update all other existing fields' values - otherwise, we create a new device.

A device may receive a different notification token at any time though. Therefore, we might create a new device, even though that device already exists in the table with a different (now inactive) notification token. Therefore, every time we send out a new notification and receive the information that a token is no longer active, we need to remove the device from this table.

users/$userId$/allergyIntolerances/$allergyIntoleranceId$

Only users with a patient role assigned have values in this collection.

Based on FHIR AllergyIntolerance, the following properties may be used, while additional properties are ignored by the Engage-HF system.

Property Type Values Comments
id string - Resource: Logical id of this artifact
type optional allergyIntoleranceType e.g. "allergy", "intolerance" In addition to the FHIR defined value set, we also use "financial" - these values shall not be exposed to EHR systems.
code CodableContent e.g. {"coding":[{"system":"https://hl7.org/fhir/R4B/valueset-allergyintolerance-code.html","code":"293963004","display":"Cardioselective beta-blocker allergy"}],"text":"Cardioselective beta-blocker allergy"} Uses either AllergyIntoleranceCode, medicationId as used in /medications/$medicationId$ and/or medicationId as used in /medicationClasses/$medicationClassId$.
patient string - userId as used in /users/$userId$ and related collections.

We use RxNorm codes to identify contraindications using the following rules:

Class Medication If allergy, not eligible for If allergy with reaction type angioedema not eligible for If intolerance not eligible for If intolerance default to If financial, not eligible for
BB Metoprolol succinate ER BB BB Metoprolol Carvedilol BB
BB Carvedilol BB BB Carvedilol Metoprolol succinate BB
BB Carvedilol phosphate ER BB BB Carvedilol Metoprolol succinate BB
BB Bisoprolol BB BB Bisoprolol Carvedilol BB
SGLT Dapagliflozin SGLT SGLT Dapagliflozin Empagliflozin SGLT
SGLT Empagliflozin SGLT SGLT Empagliflozin Dapagliflozin SGLT
SGLT Sotagliflozin SGLT SGLT Sotagliflozin Empagliflozin SGLT
SGLT Bexagliflozin SGLT SGLT Bexagliflozin Empagliflozin SGLT
SGLT Canagliflozin SGLT SGLT Canagliflozin Empagliflozin SGLT
SGLT Ertugliflozin SGLT SGLT Ertugliflozin Empagliflozin SGLT
MRA Spironolactone MRA MRA Spironolactone Eplerenone MRA
MRA Eplerenone MRA MRA Eplerenone Spironolactone MRA
ACE Quinapril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Perindopril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Ramipril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Benazepril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Captopril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Enalapril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Lisinopril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Fosinopril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Trandolapril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ACE Moexepril ACEI ACEI/ARB/ARNI ACEI Valsartan/ARNI ACEI/ARB/ARNI
ARB Losartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARB Valsartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARB Candesartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARB Irbesartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARB Telmisartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARB Olmesartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARB Azilsartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARB Eprosartan ARB/ARNI ACEI/ARB/ARNI ARB/ARNI Lisinopril ACEI/ARB/ARNI
ARNI Sacubitril-Valsartan ARB/ARNI ACEI/ARB/ARNI ARNI Valsartan ARNI
Diuretic Furosemide - - - - -
Diuretic Bumetanide - - - - -
Diuretic Torsemide - - - - -
Diuretic Ethacrynic Acid - - - - -

users/$userId$/appointments

Only users with a patient role assigned have values in this collection. There is currently no easy way to check for appointments relevant to one clinician - if it happens to be a requirement in the future, we may need to restructure this.

Based on FHIR Appointment, the following properties may be used, while additional properties are ignored by the Engage-HF system.

Property Type Values Comments
status AppointmentStatus e.g. "booked" -
created Date
start Instant - -
end Instant - -
comment optional string - May not be shown to the patient.
patientInstruction optional string - May be shown to the patient.
participant list of CodeableConcept - Must contain at least one element.
participant[x]>actor Reference(User) e.g. users/123 The Firestore path to the patient.
participant[x]>status ParticipationStatus e.g. accepted, declined, tentative, needs-action -

users/$userId$/medicationRequests/$medicationRequestId$

Only users with a patient role assigned have values in this collection.

Based on FHIR MedicationRequest, the following properties may be used, while additional properties are ignored by the Engage-HF system. Clients may ignore this list and simply query for users/$userId$/medicationRecommendations and retrieve the relevant requests from the recommendations.

Property Type Values Comments
id string - Resource: Logical id of this artifact
medication Reference(Medication) or CodeableConcept - CodeableConcept containing one of the codes from /medications/$medicationId$
dosageInstruction Dosage - -

The dosageInstruction property may contain values with the following properties:

Property Type Values Comments
id string - Resource: Logical id of this artifact
text optional string - Free text dosage instructions
additionalInstruction list of CodableConcept information like "with meals", "may cause drowsiness", etc Supplemental instruction or warnings to the patient
patientInstruction optional string - Patient or consumer oriented instructions
timing optional Timing - When medication should be administered
doseAndRate list of Element - Amount of medication administered
doseAndRate>type optional DoseRateType e.g. "calculated", "ordered"
doseAndRate>dose optional SimpleQuantity - Unit is always "tablet". Value is usually 0.5, 1 or 2.
maxDosePerPeriod optional Ratio - Upper limit on medication per unit of time
maxDosePerAdministration optional SimpleQuantity - Upper limit on medication per administration
maxDosePerLifetime optional SimpleQuantity - Upper limit on medication per unit of time

There may be up to three intakes per day (morning, mid-day and evening) with either 0.5, 1 or 2 tablets. The dosages should always be grouped by medication, i.e. there should not be multiple medication elements concerning the same medication but different dosage instructions. Instead, one medication element shall be used for that medication with multiple dosage instructions.

users/$userId$/medicationRecommendations/$medicationRecommendationId$

Only users with a patient role assigned have values in this collection.

These are the output values of the recommendation algorithms. Depending on the type, the recommendations should be displayed with different icons and texts.

Property Type Values Comments
currentMedication optional Reference(FHIRMedicationRequest) e.g. {"reference":"users/123/medicationRequest/2"} Reference to the existing medication request, if applicable.
recommendedMedication optional Reference(FHIRMedication) e.g. {"reference":"medications/2"} Reference to the recommended medication, if applicable. This should always direct to a medication, not a drug.
displayInformation DisplayInformation - The information necessary for the client to display the medication recommendation.

Medication Recommendation Type

Type Icon Current Medication Recommended Medication Comments
targetDoseReached Green Checkmark exists undefined The target dose has been reached.
personalTargetDoseReached Green Checkmark exists undefined The personal target dose has been reached, meaning that vitals signal that we should not increase the dose (yet).
improvementAvailable Yellow Up Arrow exists undefined The patient should uptitrate.
morePatientObservationsRequired Yellow maybe maybe (mutually exclusive to current medication) There are not enough patient observations to recommend anything. They should probably do some blood pressure measuring.
moreLabObservationsRequired Yellow maybe maybe (mutually exclusive to current medication) More lab observations are required to recommend anything. The patient should probably schedule an appointment with a clinician.
notStarted Gray Up Arrow undefined exists Medication has not been started, but is eligible for initiation.
noActionRequired Gray undefined exists The recommended medication is not eligible, but should still be shown to the user as an option without recommending it to them.

Diuretics, if currently present as medication request, will be shown as a recommendation with personalTargetDoseReached, so that the logic on the client becomes easier.

DisplayInformation

Property Type Values Comments
title LocalizedText e.g. "Carvedilol" The name of the medication (not the tablet), e.g. coming from medications/1998.
subtitle LocalizedText e.g. "Beta Blockers" The medication class name, e.g. coming from medicationClasses/0.
description LocalizedText e.g. "Personal target dose reached. No action required." The explanation of the recommendation, displayed along with a summary of the medication.
type Medication Recommendation Type e.g. "personalTargetDoseReached" See Medication Recommendation Type for more information.
videoPath optional string e.g. videoSections/1/videos/3 This is the video to show when the recommendation is tapped. The clients may want to hide the icon to get to the video when this value is not present.
dosageInformation DosageInformation See Dosage Information A description of the current, minimum, and target doses for a given medication.
When the patient is not yet taking the medication, its currentSchedule will be an empty list.

The DosageInformation property contains the following information:

Property Type Values Comments
currentSchedule list of DoseSchedule e.g. [25mg twice daily, 10mg daily] A list tracking how many times per day the patient currently takes each tablet.
minimumSchedule list of DoseSchedule e.g. [6.25mg daily] A list tracking how many times per day the patient would take each tablet on a minimal dose.
targetSchedule list of DoseSchedule e.g. [6.25mg daily] A list tracking how many times per day the patient would take each tablet on a maximal dose.
unit string e.g. "mg" The unit by which the ingredients in the medications are measured, as found in medications/$medicationId$/drugs/$drugId$.

The DoseSchedule object describes the number of tablets taken per day for a single medication as described in medications/$medicationId$/drugs/$drugId$. For example, taking two 5mg tablets in the morning and one 15mg tablet in the afternoon would result in two schedules: 5mg twice daily, and 15mg daily. Compound (multi-ingredient) tablets have multiple quantities per tablet, and will be displayed as e.g. 24/26mg twice daily. DoseSchedule has the following properties:

Property Type Values Comments
frequency number e.g. 1, 2, or 0.5 The number of tablets per day (as described by medicationRequests/$medicationRequestId$/dosageInstruction).
quantity list of number e.g. [24, 26] or [6.25] The amount of each active ingredient per tablet.

Observations

Only users with a patient role assigned have values in these collections.

We are storing different observations grouped by their type, e.g. we use /users/$userId$/bodyWeightObservations/$observationId$ for body weight observations and /users/$userId$/bloodPressureObservations/$observationId$ for blood pressure observations. The different collections are all listed below and they follow the specification of a FHIR observation as defined here with more strict specification following in the respective subsections.

Based on FHIR Observation, the following properties may be used, while additional properties are ignored by the Engage-HF system.

Property Type Values Comments
id string - Resource: Logical id of this artifact
status ObservationStatus e.g. "final" This value is most likely "final" in every case.
code Code e.g. {"system":"http://loinc.org","code":"55423-8","display":"Number of steps"} Use one of the codes mentioned below.
value optional Quantity e.g. {"code":"mm[Hg]","system":"http://unitsofmeasure.org","unit":"mmHg","value":120} Use one of the units listed below.
component list of components - Instead of containing a single value property, some observations are composed of multiple components (e.g. a blood pressure observation contains a diastolic and systolic component).
component[x]>code Code e.g. {"system":"http://loinc.org","code":"55423-8","display":"Number of steps"} Use one of the codes mentioned below.
component[x]>value optional Quantity e.g. {"code":"mm[Hg]","system":"http://unitsofmeasure.org","unit":"mmHg","value":120} Use one of the units listed below.
effective Period with Date objects or Date - Use Date for instant observation and periods for longer observations (e.g. more than 1 minute).

users/$userId$/bloodPressureObservations/$observationId$

Blood pressure observations contain the following code and no value.

code>system code>code code>display
"https://loinc.org" "85354-9" "Blood pressure panel with all children optional"

Further, blood pressure observations have two components.

code>system code>code code>display value>system value>value value>code value>unit
"http://loinc.org" "8462-4" "Diastolic blood pressure" "http://unitsofmeasure.org" double "mm[Hg]" "mmHg"
"http://loinc.org" "8480-6" "Systolic blood pressure" "http://unitsofmeasure.org" double "mm[Hg]" "mmHg"

users/$userId$/bodyWeightObservations/$observationId$

Body weight observations contain the following code and value.

code>system code>code code>display value>system value>value value>code value>unit
"http://loinc.org" "29463-7" "Body weight" double "http://unitsofmeasure.org" "kg" or "[lb_av]" "kg" or "lbs"

users/$userId$/creatinineObservations/$observationId$

Creatinine observations contain the following code and value.

code>system code>code code>display value>system value>value value>code value>unit
"http://loinc.org" "2160-0" "Creatinine [Mass/volume] in Serum or Plasma" double "http://unitsofmeasure.org" "mg/dL" "mg/dL"

users/$userId$/dryBodyWeightObservations/$observationId$

Dry body weight observations contain the following code and value.

code>system code>code code>display value>system value>value value>code value>unit
"http://loinc.org" "29463-7" "Body weight" double "http://unitsofmeasure.org" "kg" "kg"

users/$userId$/eGfrObservations/$observationId$

Dry body weight observations contain the following code and value.

code>system code>code code>display value>system value>value value>code value>unit
"http://loinc.org" "98979-8" "Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI 2021)" double "http://unitsofmeasure.org" "mL/min/{1.73_m2}" "mL/min/1.73_m2"

users/$userId$/heartRateObservations/$observationId$

Heart rate observations contain the following code and value.

code>system code>code code>display value>system value>value value>code value>unit
"http://loinc.org" "8867-4" "Heart rate" double "http://unitsofmeasure.org" "/min" "beats/minute"

users/$userId$/potassiumObservations/$observationId$

Potassium observations contain the following code and value.

code>system code>code code>display value>system value>value value>code value>unit
"http://loinc.org" "6298-4" "Potassium [Moles/volume] in Blood" double "http://unitsofmeasure.org" "meq/L" "mEq/L"

users/$userId$/messages/$messageId$

All users are technically allowed to have values in this collection, although the requirements only contain patient-directed messages for now.

This data is used to display messages to a user (patient or clinician). For patients messages are describing recent changes in their respective data from clinicians (e.g. updated medication requests) or calls-to-action to the patient. Currently, there are no messages planned for the clinician, but they may be added in the future.

Property Type Values Comments
dueDate optional Date - The due date of the message to be shown in-app.
completionDate optional Date - Specifies when a message has been completed. TBD: Messages containing a completionDate may either be hidden on user's devices or be shown crossed out.
type optional string e.g. "questionnaireReminder" Some messages are sent out on a regular basis, where only the most recent message is really relevant for the patient (e.g. a reminder for a questionnaire). With this property, we can easily find existing messages of the same type and replace them with a new one, if necessary.
title LocalizedText e.g. "Watch Welcome Video in Education Page." May be localized.
description optional LocalizedText e.g. "The video shows how you will be able to use this app." May be localized.
action optional string e.g. "videoSections/1/videos/0" See "Message types".
isDismissible boolean true,false Whether or not the message is dismissible by the user or is solely controlled by the server.

Message types

The following list describes all different types a message could have. Expiration of messages should only be handled by the server, except for triggering the dismissMessage Firebase function call that adds a completion date when the message is dismissible and has been dismissed by the user. A client doesn't need to know about the type property, since we would otherwise need to check whether a new message type is supported by a client. It may also sort out message types unknown for the client's version.

Type Trigger Expiration Action
MedicationChange Server: /users/$userId$/medicationRequests changed for a given user. Maximum 1 per day. Tap videoSections/$videoSectionId$/videos/$videoId$
WeightGain Server: New body weight observation received with 3 lbs increase over prior week's median. Do not trigger again for 7 days. Tap medications
MedicationUptitration Server: /users/$userId$/medicationRecommendations changed. Tap medications
Welcome Server: When creating new user. Tap videoSections/$videoSectionId$/videos/$videoId$
Vitals Server: Daily at certain time (respect timezone!) When receiving blood pressure and weight observations on the server from current day. observations
SymptomQuestionnaire Server: Every 14 days. After questionnaire responses received on server. questionnaires/$questionnaireId$
PreAppointment Server: Day (24h) before appointment. After appointment time or when it is cancelled. healthSummary

users/$userId$/questionnaireResponses/$questionnaireResponseId$

Only users with a patient role assigned have values in this collection.

Based on FHIR QuestionnaireResponse, the following properties may be used, while additional properties are ignored by the Engage-HF system.

Property Type Values Comments
id string - Resource: Logical id of this artifact
questionnaire string - canonical representation of the questionnaire, i.e. t
author string - The patient's userId
authored Date - The date the answers were gathered.
status QuestionnaireResponseStatus - Will most likely always be completed.
item list of Item - -
item[x]>linkId string - Pointer to specific item from questionnaire
item[x]>definition optional uri - details for item
item[x]>text optional string - Name for group or question text
item[x]>answer list of Answer - response(s) to the question
item[x]>answer[y]>value any - Value depending on the type of question in the survey, e.g. boolean, integer, date, string, etc

users/$userId$/symptomScores/$symptomScoreId$

Only users with a patient role assigned have values in this collection.

Whenever a new questionnaire response is uploaded to Firestore, we calculate the score and keep the results here for easy retrieval later on. We also do not compute the score anywhere but simply refer to the scores listed in this collection.

Property Type Values Comments
questionnaireResponseId optional string - questionnaireResponseId as used in users/$userId$/questionnaireResponses/$questionnaireResponseId$ to be able to verify score calculations afterwards. It should be ignored by all clients.
date Date - must be equivalent to the date specified in the linked questionnaire response.
overallScore number must be between 0 and 100 -
physicalLimitsScore number must be between 0 and 100 -
specificSymptomsScore number must be between 0 and 100 -
socialLimitsScore number must be between 0 and 100 -
qualityOfLifeScore number must be between 0 and 100 -
dizzinessScore number must be between 0 and 100 -

videoSections/$videoSectionId$

In this section, we describe all data related to educational videos to be shown in the Engage-HF mobile apps. The videos are grouped into different categories to be displayed as sections in the mobile apps.

Property Type Values Comments
title LocalizedText e.g. "ENGAGE-HF Application" May be localized.
description LocalizedText e.g. "Helpful videos on the ENGAGE-HF mobile application." May be localized. Are there different videos / videoSections for each platform?
orderIndex integer e.g. 1 Since Firestore collections aren't necessarily ordered, we have this property to order the elements by on the clients. The list is supposed to be ordered ascending by orderIndex.

videoSections/$videoSectionId$/videos/$videoId$

Property Type Values Comments
title LocalizedText e.g. "Beta Blockers for Heart Failure" May be localized.
youtubeId LocalizedText e.g. "XfgcXkq61k0" Contains the video id from YouTube.
orderIndex integer e.g. 1 Since Firestore collections aren't necessarily ordered, we have this property to order the elements by on the clients. The list is supposed to be ordered ascending by orderIndex.

Embed links for YouTube: https://youtube.com/embed/${youtubeId}. Short links for YouTube: https://youtu.be/${youtubeId}. Watch links for YouTube: https://youtube.com/watch?v=${youtubeId}.

Functions

checkInvitationCode

Use checkInvitationCode to check if an invitation code is still available and connect the currently (anonymously) authenticated userId with the invitation.

  • Note: Currently, due to an issue with Firebase Authentication, the user is already enrolled after calling this function with a full user account and an invitation code may be used infinitely often. This should not be the case in the production system.

Security

Any authenticated user may use this function, but it should only occur before that user has linked credentials or the user object has been created.

Input

Property Type Values Comments
invitationCode string - The invitation code provided to the user by the organization. It needs to be between 6-12 characters long and only use uppercase latin characters and arabic digits.

Output

None.

createInvitation

Use createInvitation to create invitations to be sent out to new patients, clinicians or owners.

Security

An admin may create invitations for any user, an owner or clinician may only create invitations within their own organization and below or equal their own rank (i.e. clinicians cannot create owners, owners cannot create admins). Patients may not call this function.

Input

Property Type Values Comments
auth object - Authentication information about the user to be invited.
auth>displayName optional string - A display name to use for the user.
auth>email optional string - An email address to use for the user. This is non-optional for invitations for owners and clinicians, since this email address is used as the invitation code for SSO.
auth>phoneNumber optional string - A phone number to use for the user.
auth>photoURL optional string - A photo URL to use for the user.
user object - A prepared user object to use for the enrollment of the user when using the invitation. It may contain the same properties as in the users collection, except for dateOfEnrollment and invitationCode.

Output

Property Type Values Comments
id string - The Firestore document id of the created invitation.

customSeed

Use customSeed to seed Firestore with your own custom data with little effort. It may also be used to create users, which is not possible with the client SDK or to circumvent security rules temporarily before running tests, etc.

Security

This function may only be called by admins. On emulators, this function can easily be triggered without authentication using an HTTP POST request.

Input

Property Type Values Comments
firestore optional object - Custom data to seed firestore with. It needs to be nested at least two levels deep with the first level defining the collection (e.g. videoSections/0/videos) and the second defining the document id (e.g. 1).
users optional object - Custom user creation using authentication information, user data (dateOfBirth, etc) and user collections (e.g. appointments, bodyWeightObservations, etc).
users[x]>auth object - User authentication information for login after the user has been created.
users[x]>auth>uid optional string - The user id to use when creating the user. When omitted, an id will be autogenerated.
users[x]>auth>email string - The email address to log into the user after it has been created.
users[x]>auth>password string - The password to log into the user after it has been created.
users[x]>user optional object - The user object that will be placed at users/$userId$. This may be useful, when the userId is not specified, since the seeding function will make use of the auto-generated id.
users[x]>collections optional object - Similar to the firestore property, this content will be placed at the given path prefixed by users/$userId$/.

Output

None.

defaultSeed

Use defaultSeed to seed Firestore with some default data. Depending on input, it may create users, invitations, static data (including videoSections, medications, etc) and/or fill existing user's collections.

Security

This function may only be called by admins. On emulators, this function can easily be triggered without authentication using an HTTP POST request.

Input

Property Type Values Comments
date string - An ISO 8601 formatted string of the date to seed data relative to. May be omitted, which will generate data relative to now.
only list of string e.g. ["users","invitations"] Allows to limit seeding data to the provided collections.
onlyUserCollections list of string e.g. ["appointments","bodyWeightObservations"] Allows to limit the creation of user collections for the created users to the provided collections.
staticData object - Allows to seed static data without calling updateStaticData separately. If not provided, static data will not be updated.
userData list of object - Allows to seed user collections to existing users.
userData[x]>userId string - The userId for the user to create seeding data for.
userData[x]>only list of string - The user collections to create seeding data for. If not provided, all available collections will be seeded.

Output

None.

dismissMessage

Use dismissMessage to dismiss messages that are marked with isDismissible equals true. Using this function on non-dismissible functions results in an error. Clients may call this function either on deletion of the user (by displaying an x-mark tapped by the user to specifically remove this message) or on perform of the message (i.e. on tap of the message, if the action could successfully be decoded and performed).

Security

Admins may dismiss messages for any user, otherwise users may only dismiss their own messages.

Input

Property Type Values Comments
userId optional string - The userId of the user whose message you are dismissing. May be omitted for users dismissing their own messages.
messageId string - The id of the message to dismiss. This message needs to have isDismissible set to true.
didPerformAction optional boolean - Whether the message action has actually been performed. Depending on this value, the server may decide to actually dismiss the message or not.

Output

None.

exportHealthSummary

exportHealthSummary creates a health summary PDF and returns its data.

Security

This function may be called by admins (for any patient), owners/clinicians (for patients of the same organization), or patients (for themselves).

Input

Property Type Values Comments
userId string - The patient's user id. Needs to be specified, even if a patient is requesting the health summary for themselves.
language optional string e.g. 'en-US' See LocalizedText for specification.
weightUnit optional string e.g. '[lb_av]' A loinc code for the weight unit to be used during generation of the health summary PDF

Output

Property Type Values Comments
content string - Base64-encoded string of the PDF data.

registerDevice

Use registerDevice to register different client devices for receival of push notifications. Call this function on each fresh start of the app or whenever the push notification token (or any of the remaining data, including language/region settings) may have changed.

Security

Any user can register devices for their own account. In the foreseeable future, the function is only relevant for patients though.

Input

If a notification token could not be generated on the device (e.g. due to missing permissions), simply do not call this function rather than creating a device without token. For the remaining inputs, please provide all values that are available.

Property Type Values Comments
notificationToken string - The notification token to be used for sending push notifications. This may either be an APNS token for iOS devices or a FCM registration token for Android.
platform string 'iOS' or 'Android' The platform of the device.
osVersion optional string '15.4.3' The OS version of the device using semantic versioning separated by dots. Minor and patch version may be omitted.
appVersion optional string '1.0.1' The app version as shown in the App Store or Play Store using semantic versioning. Minor and patch version may be omitted.
appBuild optional string '43' The app build version as used internally to identify individual builds within the same marketing version (i.e. the one shown in App Store / Play Store).
language optional string 'en-US' The language and region setting as specified for LocalizedText.
timeZone optional string e.g. "America/Los_Angeles" The value needs to correspond to an identifier from TZDB. It must not be an offset to UTC/GMT, since that wouldn't work well with daylight-savings (even if there is no daylight-savings time at that location). Also, don't use common abbreviations like PST, PDT, CEST, etc (they may be ambiguous, e.g. CST). If the timeZone is unknown, then "America/Los_Angeles" should be used.

Output

None.

unregisterDevice

Use unregisterDevice to remove a notification token associated to a user account. This will only remove it from the authenticated user.

Security

Any user can unregister devices for their own account. In the foreseeable future, the function is only relevant for patients though.

Input

If a notification token could not be generated on the device (e.g. due to missing permissions), simply do not call this function rather than creating a device without token. For the remaining inputs, please provide all values that are available.

Property Type Values Comments
notificationToken string - The notification token to be used for sending push notifications. This may either be an APNS token for iOS devices or a FCM registration token for Android.
platform string 'iOS' or 'Android' The platform of the device.

Output

None.

updateStaticData

Use updateStaticData to update statically present data in Firestore. This function may either be called when the configuration of the static data has changed or when dynamically generated content needs an update (e.g. medication data is generated based on the RxNorm API).

Security

This function may only be called by admins. On emulators, this function can easily be triggered without authentication using an HTTP POST request.

Input

Property Type Values Comments
only optional list of string e.g. ["videoSections","medications"] The static components to update. If omitted, all components will be updated.
cachingStrategy optional string e.g. "expectCache" Depending on this property static data may simply be updated in Firestore based on cached data or completely generated from scratch and not relying on cached information.

Output

None.

Indexes

To perform certain queries, ENGAGE-HF requires indexes on different properties. The following indexes need to be created:

Type Reference Properties Usage
Composite collection:users organization:asc,type:asc,name:asc Querying users on the Web dashboard
Composite collection:invitations user.organization:asc,user.type:asc,name:asc Querying invitations on the Web dashboard
Single group:appointments start:asc Querying appointments across all users (for appointment messages)
Single group:devices notificationToken:asc Querying devices across all users (for deleting existing notification tokens assigned to other users)

Usage

To use Firebase functions for your own project or to emulate them for client applications, this section will help to give an overview of the different packages in use and how to install, build, test and launch them.

This repository contains two separate packages.

  • The package located in functions/models contains model types including decoding/encoding functions and useful extensions that are shared between the Firebase functions and the web dashboard. This package is released via the npm registry and can be accessed as @stanfordbdhg/engagehf-models.
  • The package located in functions contains the Firebase functions and services that are called from these functions. This package has a local dependency on the package in functions/models. Therefore, the functions package does not work (e.g. for linting, building, etc) without building the models package first.

To make this structure simpler to use, we provide different scripts as part of the package.json file in the root directory of this repository. The file ensures execution order between the two packages. We only document the scripts located in this file, since they cover the most common use cases, feel free to have a look at the individual package.json files of the respective packages to get a deeper understanding and more package-focused operations.

Command Purpose
npm run install Installs dependencies (incl. dev dependencies) for both packages.
npm run clean Cleans existing build artifacts for both packages.
npm run build Builds both packages. If you have added or removed files in one of the packages, make sure to clean before using this command.
npm run lint Lints both packages. Make sure to build before using this command. You may want to append :fix to fix existing issues automatically or :strict to make sure the command does not succeed with existing warnings or errors.
npm run prepare Combines cleaning, installing and building both packages.
npm run test:ci Tests the Firebase functions with emulators running and with test coverage collection active.
npm run serve:seeded Starts up the relevant emulators for ENGAGE-HF and seeds them. Make sure to build the project first before executing this command.

For using the emulators for client applications, it is probably easiest to call npm run prepare whenever files could have changed (e.g. when changing branch or pulling new changes) and then calling npm run serve:seeded to start up the emulators in a seeded state. Both of these commands are performed in the root directory of this repository.

Resources

  • See resources/algorithms for diagrams describing the different algorithms for medication recommendations.
  • For definitions relevant for the setup of static data, including questionnaires, medication classes, medications and videoSections, have a look at functions/data.

Security

A user usually has one of these roles assigned (some combinations are technically allowed, but may be ignored, e.g. owner+clinician).

Role Scope Rights Source of Truth
Admin Everything R/W User type is admin.
Owner In organization R/W of users, R/W of organization User type is owner.
Clinician In organization R/W of users User type is clinician.
Patient Own data R/W of users/$userId$ incl patient-specific collections User type is patient.
User Own data R/W of users/$userId$ auth has same userId

For more detail, please consult the Firestore rules defined in firestore.rules.

About

Firebase cloud hosting infrastructure for the ENGAGE-HF project.

Resources

License

Code of conduct

Security policy

Stars

Watchers

Forks

Sponsor this project

Packages

No packages published