A bar with ploidies will be plotted on the right side of the heatmap. Note: Current version uses the GRCh37 (hg19) genome. If a different species or genome build is desired, the "chromosome_sizes" list can be adjusted in the skript. Dependencies: csv, argparse, cairosvg Usage: -o Output filename -c node_unmerged_cnv_calls.bed file from the 10x pipeline output -p per_cell_summary_metrics.csv file from the 10x pipeline output Optional: -e Set to "no" to include noisy cells marked by the 10x pipeline. Default is "yes"
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StefanKurtenbach/scCNV_heatmap
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Generates meaninful heatmaps from 10x single cell CNV data
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