New JOSS paper draft #829

matteobachetti · 2024-07-04T14:08:07Z

This PR adds a new paper we are submitting to JOSS. We had already a publication in 2019, and in this paper we describe all the improvements of the code in the last 5 years.
The paper is in paper2.md, the bibliography in joss2.bib

codecov · 2024-07-04T14:12:04Z

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Project coverage is 95.98%. Comparing base (ba8d06d) to head (c00a97c).

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matteobachetti · 2024-07-04T14:32:05Z

Hello @abigailStev @jdswinbank @mgullik @matteolucchini1 @eleonorav89 @theand9 @Gaurav17Joshi @pupperemeritus @francescodoan @swapsha96 @mihirtripathi97 @dhruv9vats
This paper describes the work done since the first JOSS paper in 2019. You are listed as co-authors because you have given major contributions that are explicitly listed in the manuscript.
We need each of you to accept or decline explicitly the co-authorship, and give your affiliation and (if any) your OrcID number. And of course, feel free to comment on the manuscript!
Thanks in advance!

eleonorav89 · 2024-07-04T15:33:24Z

Very nice job! Thank you @matteobachetti for including me :)

pupperemeritus · 2024-07-04T16:03:45Z

Thank you @matteobachetti. I'd love to be a coauthor. 0009-0006-3745-5553 is my OrcID.

matteolucchini1 · 2024-07-04T16:12:27Z

Hi @matteobachetti , I would be very happy to be a co-author, thanks for including me!

My current affiliation is "Anton Pannekoek Institute, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands" and my OrcID is 0000-0002-2235-3347. Do you have a deadline for when you would like comments? I will be very busy the next two weeks, but I might find some time after COSPAR.

francescodoan · 2024-07-04T16:21:59Z

Hello everyone!
Thank you @matteobachetti for including me in the coauthor list!

My Orcid: 0000-0003-0799-5760
My current affiliation is LIPN-Université Sorbonne Paris Nord.

Let me know if there is anything else I can do!

Gaurav17Joshi · 2024-07-04T17:50:39Z

Thanks for the invite.I would be very happy to be a co-author. I am at Indian Institute of Technology Gandhinagar, and my ORCID ID is 0009-0009-2305-5008.

matteobachetti · 2024-07-04T18:10:02Z

Thank you @matteobachetti. I'd love to be a coauthor. 0009-0006-3745-5553 is my OrcID.

what is your affiliation @pupperemeritus ?

pupperemeritus · 2024-07-04T18:11:26Z

It's Chaitanya Bharathi Institute of Technology, Hyderabad,India.

dhruv9vats · 2024-07-04T20:20:53Z

Thank you for the consideration!
I'd be more than happy to be a co-author @matteobachetti.

My current affiliation: Voltron Data, US, worldwide remote
My OrcID: 0009-0001-0542-0755

mihirtripathi97 · 2024-07-05T02:19:08Z

Hi @matteobachetti, Thank you for including me! I would love to be a co-author.

My current affiliation: Academia Sinica Institute of Astronomy & Astrophysics 11F of Astronomy-Mathematics Building, AS/NTU, No. 1, Section 4, Roosevelt Road, Taipei 10617, Taiwan, R.O.C.

My ORCID: 0009-0007-2723-0315

swapsha96 · 2024-07-05T07:27:32Z

Thanks, @matteobachetti. I accept the co-authorship. My affiliation is "Indian Institute of Technology, Mandi".

mgullik

Hi @matteobachetti,
thanks for including me in this paper, I accept to be a co-author.
I left a few comments directly on the text.

joss/paper2.md

mgullik · 2024-07-05T13:10:48Z

joss/paper2.md

+Recovery and Resilience Plan (NRRP) - Mission 4 Component 2 within the activities of Spoke 3
+(Astrophysics and Cosmos Observations)
+D.H. is supported by the Women In Science Excel (WISE) programme of the Netherlands Organisation for Scientific Research (NWO).
+


If I may add my acknowledgments (it's not strictly necessary though )
G.M. acknowledges financial support from the European Union’s Horizon Europe research and innovation programme under the Marie Sk\l{}odowska-Curie grant agreement No. 101107057

mgullik · 2024-07-05T13:12:21Z

joss/paper2.md

+
+We introduced a wide range of new techniques particularly designed to analyse unevenly sampled data sets, responding to the growing need for these techniques with the advent of large-scale astronomical time domain surveys, subject to irregular observing constraints. Methods include Gaussian Process modeling of quasi-periodic oscillations [hubner] and Lomb-Scargle cross spectra [scargle]. We have introduced the Fourier-Domain Acceleration Search [ransom] for pulsars; the H-test [dejager] and Phase Dispersion Minimization  [stellingwerf] statistics were also introduced into the pulsar sub package to evaluate the folded profiles of pulsars. We expanded the statistical capabilities of Stingray by introducing a number of statistical evaluation functions to estimate the statistics of periodograms, with particular attention to the upper limits on variable power.
+
+Finally, we have added a number of high-level exploratory and diagnostic functionality specifically as an essential toolbox to characterize accreting compact objects during their outbursts: standard measures such as color-color and hardness-intensity diagrams, and their equivalent diagnostics in the frequency domain, "power colors" [@powercolors].


"standard measures" -> "standard products"

theand9 · 2024-07-08T16:18:59Z

@matteobachetti Thank you so much for including me and recognizing my contributions!

ORCID: 0000-0002-6015-9553
Current Affiliation: Carnegie Mellon University

matteobachetti · 2024-09-09T13:19:32Z

Comments from @masonng-astro :

Consistency between using “modelling” and “modeling”, except for the reference to the subpackage
“analyse” was written in the text instead of “analyze” (I assume the authors are adopting US English spelling throughout)
The hyperlinks to “our benchmarks” and “Lightkurve” point to wrong locations
I believe the authors will be adding the references before final approval

Ref: pyOpenSci/software-submission#201 (comment)

matteobachetti · 2024-09-10T11:05:41Z

@JohannesBuchner I just realized that you should also be in this paper ;)
Could you confirm and give me your affiliation and ORCID?

JohannesBuchner · 2024-09-10T11:16:55Z

OK :)

0000-0003-0426-6634

Max Planck Institute for Extraterrestrial Physics, Giessenbachstrasse, 85741 Garching, Germany

no acks necessary

matteobachetti added the no-changelog-entry-needed label Jul 4, 2024

matteobachetti marked this pull request as draft July 4, 2024 14:08

matteobachetti mentioned this pull request Jul 4, 2024

Stingray Submission pyOpenSci/software-submission#201

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mgullik reviewed Jul 5, 2024

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matteobachetti force-pushed the update_joss_paper branch from 8cf2de9 to 9ac0188 Compare July 5, 2024 13:22

matteobachetti marked this pull request as ready for review October 24, 2024 07:21

dhuppenkothen approved these changes Oct 24, 2024

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matteobachetti added 7 commits October 24, 2024 11:05

New joss paper draft

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Add Daniela's acknowledgement

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Add a few affiliations

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matteobachetti and others added 19 commits October 24, 2024 11:05

Small fixes [docs only]

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Minor fixes -- syntax, broken links

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Add Johannes' data

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JOSS editorial tweaks, mostly to reference titles

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matteobachetti force-pushed the update_joss_paper branch from fb7335e to 6564e89 Compare October 24, 2024 09:05

matteobachetti added 6 commits October 25, 2024 10:48

Add badge to new JOSS paper

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matteobachetti added this pull request to the merge queue Oct 25, 2024

Merged via the queue into main with commit 137d17d Oct 25, 2024
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matteobachetti deleted the update_joss_paper branch October 25, 2024 11:52

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New JOSS paper draft #829

New JOSS paper draft #829

matteobachetti commented Jul 4, 2024

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eleonorav89 commented Jul 4, 2024

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Gaurav17Joshi commented Jul 4, 2024

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		We introduced a wide range of new techniques particularly designed to analyse unevenly sampled data sets, responding to the growing need for these techniques with the advent of large-scale astronomical time domain surveys, subject to irregular observing constraints. Methods include Gaussian Process modeling of quasi-periodic oscillations [hubner] and Lomb-Scargle cross spectra [scargle]. We have introduced the Fourier-Domain Acceleration Search [ransom] for pulsars; the H-test [dejager] and Phase Dispersion Minimization [stellingwerf] statistics were also introduced into the pulsar sub package to evaluate the folded profiles of pulsars. We expanded the statistical capabilities of Stingray by introducing a number of statistical evaluation functions to estimate the statistics of periodograms, with particular attention to the upper limits on variable power.

		Finally, we have added a number of high-level exploratory and diagnostic functionality specifically as an essential toolbox to characterize accreting compact objects during their outbursts: standard measures such as color-color and hardness-intensity diagrams, and their equivalent diagnostics in the frequency domain, "power colors" [@powercolors].

New JOSS paper draft #829

New JOSS paper draft #829

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dhruv9vats commented Jul 4, 2024

mihirtripathi97 commented Jul 5, 2024

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