Skip to content
pr-validation

fix: bump numpy version in tests #1553

Sign in to view logs

fix: bump numpy version in tests

fix: bump numpy version in tests #1553

Workflow file for this run

.github/workflows/validate-pr.yml at a8e46c3
name: pr-validation
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
pr-validation:
name: test-py-${{ matrix.python }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-22.04]
python: ["3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
with:
path: substrafl
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- uses: actions/cache@v3.0.8
id: cache
with:
path: ${{ env.pythonLocation }}
key: ${{ runner.os }}-${{ env.pythonLocation }}-pip-${{ hashFiles('substrafl/pyproject.toml') }}-${{ hashFiles ('substrafl/docs/requirements.txt') }}-${{ hashFiles('substrafl/benchmark/camelyon/requirements.txt') }}
- name: Install lint checks
run: |
pip install --upgrade pip
pip install --upgrade pytest black flake8 pre-commit
- name: Code conventions
run: |
cd substrafl
pre-commit run --all-files
- uses: actions/checkout@v4
with:
repository: substra/substra-tools
path: substratools
- uses: actions/checkout@v4
with:
repository: substra/substra
path: substra
- name: Install package
run: |
pip install --upgrade -e substrafl[dev]
pip install --upgrade -e substra
pip install --upgrade -e substratools
- name: Run the fast local tests
run: |
cd substrafl
make COV_OPTIONS="--cov=substrafl --cov-append --cov-report=html:htmlcov" test-subprocess-fast
- name: Upload coverage artifacts
uses: actions/upload-artifact@v3
with:
name: coverage
path: substrafl/htmlcov
pr-validation-docs:
runs-on: ubuntu-22.04
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
- uses: actions/cache@v3.0.8
id: cache
with:
path: ${{ env.pythonLocation }}
key: ${{ runner.os }}-${{ env.pythonLocation }}-pip-${{ hashFiles('substrafl/pyproject.toml') }}-${{ hashFiles ('substrafl/docs/requirements.txt') }}-${{ hashFiles('substrafl/benchmark/camelyon/requirements.txt') }}
- uses: actions/checkout@v4
with:
repository: substra/substra
path: substra
- uses: actions/checkout@v4
with:
repository: substra/substra-tools
path: substratools
- name: Install Dependencies
run: |
pip install --upgrade ./substra
pip install --upgrade -e ./substratools
pip install --upgrade .[dev]
pip install --upgrade -r docs/requirements.txt
- name: Test docs
run: |
cd docs
make clean html
benchmark:
name: benchmark-${{ matrix.python }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-22.04]
python: ["3.10", "3.11", "3.12"]
steps:
- uses: actions/setup-python@v5
with:
python-version: 3.12
- uses: actions/checkout@v4
with:
path: substrafl
- uses: actions/checkout@v4
with:
repository: substra/substra-tools
path: substratools
- uses: actions/checkout@v4
with:
repository: substra/substra
path: substra
- uses: actions/cache@v3.0.8
id: cache
with:
path: ${{ env.pythonLocation }}
key: ${{ runner.os }}-${{ env.pythonLocation }}-pip-${{ hashFiles('substrafl/pyproject.toml') }}-${{ hashFiles ('substrafl/docs/requirements.txt') }}-${{ hashFiles('substrafl/benchmark/camelyon/requirements.txt') }}
- uses: actions/cache@v3.0.8
id: data
with:
path: /home/runner/work/substrafl/data
key: data
# The benchmark data cache has to be updated manually if the data changes
- name: Install package
run: |
pip install --upgrade -e substrafl[dev]
pip install --upgrade -e substra
pip install --upgrade -e substratools
pip install --upgrade -r substrafl/benchmark/camelyon/requirements.txt
- name: Run the local benchmark
run: |
cd substrafl
mkdir -p /home/runner/work/substrafl/data/tiles_0.5mpp
python benchmark/camelyon/benchmarks.py \
--mode subprocess \
--nb-train-data-samples 2 \
--nb-test-data-samples 2 \
--batch-size 4 \
--n-local-steps 1 \
--n-rounds 2 \
--data-path /home/runner/work/substrafl/data