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Add an Intel easybuild module for scicore #259

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merged 10 commits into from
Jun 7, 2020
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@acavelan acavelan commented May 27, 2020

  • Adds easyconfig/OpenMalaria-41.0-iomkl-2019.01.eb to compile and install OM with Intel at sciCORE
  • Enforce ANSI compliance when using the Intel compiler by using either -fp-model source
  • Disable the timer for the checkpoint in Simulator.cpp to avoid a deadlock with the Intel compiler
  • All unittests + test scenarios pass
  • Automated tests continue to fail for Mac OS because the automated build uses Boost 1.71.
    => This is an unrelated issue to this pull request and should not prevent merging in develop

EasyBuild uses the -fp-model source flag. It creates the following cmake command:

cmake -DCMAKE_INSTALL_PREFIX=/scicore/home/scicore/cavelan/.local/easybuild/software/OpenMalaria/41.0-iomkl-2019.01 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='icc' -DCMAKE_Fortran_FLAGS='-O2 -xHost -ftz -fp-speculation=safe -fp-model source' -DCMAKE_CXX_FLAGS='-O2 -xHost -ftz -fp-speculation=safe -fp-model source' -DCMAKE_CXX_COMPILER='icpc' -DCMAKE_Fortran_COMPILER='ifort' -DCMAKE_C_FLAGS='-O2 -xHost -ftz -fp-speculation=safe -fp-model source' -DCMAKE_VERBOSE_MAKEFILE=ON -DBOOST_ROOT=/scicore/soft/apps/Boost/1.61.0-goolf-1.7.20 -DBoost_NO_SYSTEM_PATHS=ON -DBoost_NO_BOOST_CMAKE=ON ..

@acavelan acavelan closed this Jun 3, 2020
@acavelan acavelan reopened this Jun 3, 2020
@acavelan acavelan changed the base branch from master to develop June 3, 2020 06:48
@acavelan acavelan merged commit bff73ee into develop Jun 7, 2020
@acavelan acavelan deleted the scicore-easybuild-module branch January 6, 2021 09:23
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2 participants