Collect compute usage metrics from NCI Gadi BioCommons Canu Workflow. This workflow is specifically optimised for NCI Gadi infrastructure and can be found here: https://github.com/AustralianBioCommons/Canu/blob/master/NCI_optimisation.md
- Change to your Canu working directory (where you ran the PBS script)
- Clone this repo by:
git clone https://github.com/Sydney-Informatics-Hub/BioCommons-Canu-Metrics.git - Run the script by:
perl usage_biocommons_canu.pl
The metrics will be printed to screen.
The metrics below were kindly shared by the Plant Breeding Institute Research Group at the University of Sydney.
- Species: Barley leaf rust
- Technology: PacBio
- BioCommons Canu version: 2.0
Working directory: /scratch/gadi_project_code/path_to_canu_run
Total number of shell scripts: 67
Total number of pbs scripts: 44
Total disk usage after processing: 55G
Total inode usage after processing: 1523
----------------------------------------------------------------
Canu steps performed:
----------------------------------------------------------------
----------------------------------------------------------------
setup
Number of shell scripts: 24
Number of pbs scripts: 24
Number of gadi usage logs found: 24
Gadi usage file: canu-scripts/canu.01.out canu-scripts/canu.02.out canu-scripts/canu.03.out canu-scripts/canu.04.out canu-scripts/canu.05.out canu-scripts/canu.06.out canu-scripts/canu.07.out canu-scripts/canu.08.out canu-scripts/canu.09.out canu-scripts/canu.10.out canu-scripts/canu.11.out canu-scripts/canu.12.out canu-scripts/canu.13.out canu-scripts/canu.14.out canu-scripts/canu.15.out canu-scripts/canu.16.out canu-scripts/canu.17.out canu-scripts/canu.18.out canu-scripts/canu.19.out canu-scripts/canu.20.out canu-scripts/canu.21.out canu-scripts/canu.22.out canu-scripts/canu.23.out Logs/canu.o
Gadi PBS scripts: ./jobwrapper_1595490101.pbs ./jobwrapper_1595470823.pbs ./jobwrapper_1595478841.pbs ./jobwrapper_1595462897.pbs ./jobwrapper_1595534153.pbs ./jobwrapper_1595508115.pbs ./jobwrapper_1595462993.pbs ./jobwrapper_1595485830.pbs ./jobwrapper_1595490478.pbs ./jobwrapper_1595485731.pbs ./jobwrapper_1595460657.pbs ./jobwrapper_1595537262.pbs ./jobwrapper_1595463952.pbs ./jobwrapper_1595507639.pbs ./jobwrapper_1595461294.pbs ./jobwrapper_1595508807.pbs ./jobwrapper_1595479139.pbs ./jobwrapper_1595490408.pbs ./jobwrapper_1595479237.pbs ./jobwrapper_1595507770.pbs ./jobwrapper_1595462288.pbs ./jobwrapper_1595535074.pbs ./biocommons_canu.pbs ./jobwrapper_1595461244.pbs
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correction
Second level steps:
0-mercounts
Number of shell scripts: 5
Number of pbs scripts: 2
Number of gadi usage logs found: 2
Gadi usage file: correction/0-mercounts/meryl_BLR.o8904252 correction/0-mercounts/meryl_BLR.o8903651
Gadi pbs scripts: correction/0-mercounts/jobwrapper_1595460656.pbs correction/0-mercounts/jobwrapper_1595461244.pbs
1-overlapper
Number of shell scripts: 4
Number of pbs scripts: 2
Number of gadi usage logs found: 2
Gadi usage file: correction/1-overlapper/cormhap_BLR.o8904978 correction/1-overlapper/cormhap_BLR.o8904260
Gadi pbs scripts: correction/1-overlapper/jobwrapper_1595462287.pbs correction/1-overlapper/jobwrapper_1595461294.pbs
2-correction
Number of shell scripts: 6
Number of pbs scripts: 3
Number of gadi usage logs found: 5
Gadi usage file: correction/2-correction/cor_BLR.o8905525 correction/2-correction/cor_BLR.o8912734 correction/2-correction/cor_BLR.o8912722 correction/2-correction/cor_BLR.o8912730 correction/2-correction/cor_BLR.o8912726
Gadi pbs scripts: correction/2-correction/jobwrapper_1595470823.pbs correction/2-correction/jobwrapper_1595470822.pbs correction/2-correction/jobwrapper_1595463952.pbs
BLR.corStore
Number of shell scripts: 0
Number of pbs scripts: 0
Number of gadi usage logs found: 0
Gadi usage file: 0
Gadi pbs scripts: 0
----------------------------------------------------------------
trimming
Second level steps:
0-mercounts
Number of shell scripts: 5
Number of pbs scripts: 2
Number of gadi usage logs found: 2
Gadi usage file: trimming/0-mercounts/meryl_BLR.o8918133 trimming/0-mercounts/meryl_BLR.o8918356
Gadi pbs scripts: trimming/0-mercounts/jobwrapper_1595478841.pbs trimming/0-mercounts/jobwrapper_1595479136.pbs
1-overlapper
Number of shell scripts: 2
Number of pbs scripts: 1
Number of gadi usage logs found: 1
Gadi usage file: trimming/1-overlapper/obtovl_BLR.o8918424
Gadi pbs scripts: trimming/1-overlapper/jobwrapper_1595479234.pbs
3-overlapbasedtrimming
Number of shell scripts: 0
Number of pbs scripts: 0
Number of gadi usage logs found: 0
Gadi usage file: 0
Gadi pbs scripts: 0
----------------------------------------------------------------
unitigging
Second level steps:
0-mercounts
Number of shell scripts: 5
Number of pbs scripts: 2
Number of gadi usage logs found: 2
Gadi usage file: unitigging/0-mercounts/meryl_BLR.o8928366 unitigging/0-mercounts/meryl_BLR.o8928113
Gadi pbs scripts: unitigging/0-mercounts/jobwrapper_1595490100.pbs unitigging/0-mercounts/jobwrapper_1595490408.pbs
1-overlapper
Number of shell scripts: 2
Number of pbs scripts: 1
Number of gadi usage logs found: 1
Gadi usage file: unitigging/1-overlapper/utgovl_BLR.o8928424
Gadi pbs scripts: unitigging/1-overlapper/jobwrapper_1595490477.pbs
3-overlapErrorAdjustment
Number of shell scripts: 4
Number of pbs scripts: 2
Number of gadi usage logs found: 2
Gadi usage file: unitigging/3-overlapErrorAdjustment/oea_BLR.o8939744 unitigging/3-overlapErrorAdjustment/red_BLR.o8939584
Gadi pbs scripts: unitigging/3-overlapErrorAdjustment/jobwrapper_1595508115.pbs unitigging/3-overlapErrorAdjustment/jobwrapper_1595508807.pbs
4-unitigger
Number of shell scripts: 4
Number of pbs scripts: 2
Number of gadi usage logs found: 2
Gadi usage file: unitigging/4-unitigger/gfa_BLR.o8948513 unitigging/4-unitigger/bat_BLR.o8948198
Gadi pbs scripts: unitigging/4-unitigger/jobwrapper_1595534153.pbs unitigging/4-unitigger/jobwrapper_1595537262.pbs
5-consensus
Number of shell scripts: 2
Number of pbs scripts: 1
Number of gadi usage logs found: 1
Gadi usage file: unitigging/5-consensus/cns_BLR.o8948285
Gadi pbs scripts: unitigging/5-consensus/jobwrapper_1595535074.pbs
BLR.ctgStore
Number of shell scripts: 0
Number of pbs scripts: 0
Number of gadi usage logs found: 0
Gadi usage file: 0
Gadi pbs scripts: 0
BLR.ovlStore
Number of shell scripts: 4
Number of pbs scripts: 2
Number of gadi usage logs found: 2
Gadi usage file: unitigging/BLR.ovlStore/ovB_BLR.o8939446 unitigging/BLR.ovlStore/ovS_BLR.o8939484
Gadi pbs scripts: unitigging/BLR.ovlStore/jobwrapper_1595507639.pbs unitigging/BLR.ovlStore/jobwrapper_1595507770.pbs
BLR.utgStore
Number of shell scripts: 0
Number of pbs scripts: 0
Number of gadi usage logs found: 0
Gadi usage file: 0
Gadi pbs scripts: 0
----------------------------------------------------------------
Compute resources used
----------------------------------------------------------------
# Set up
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
canu.01.out 1 1 4.0GB 72.05MB 00:00:01 0.02 48:00:00 00:00:03 0.05 100.0MB 0B 0.40 0.00
canu.02.out 1 1 4.0GB 431.1MB 00:00:02 0.03 48:00:00 00:00:05 0.08 100.0MB 0B 0.38 0.00
canu.03.out 1 1 4.0GB 88.61MB 00:00:03 0.05 48:00:00 00:00:10 0.17 100.0MB 0B 0.29 0.01
canu.04.out 1 1 4.0GB 981.06MB 00:00:02 0.03 48:00:00 00:00:05 0.08 100.0MB 0B 0.38 0.00
canu.05.out 1 1 4.0GB 31.61MB 00:00:01 0.02 48:00:00 00:00:03 0.05 100.0MB 0B 0.40 0.00
canu.06.out 1 1 4.0GB 4.0GB 00:07:01 7.02 48:00:00 00:07:28 7.47 100.0MB 0B 0.94 0.25
canu.07.out 1 1 4.0GB 70.34MB 00:00:02 0.03 48:00:00 00:00:07 0.12 100.0MB 0B 0.25 0.00
canu.08.out 1 1 5.0GB 5.0GB 00:06:06 6.10 48:00:00 00:06:40 6.67 500.0MB 0B 0.91 0.33
canu.09.out 1 1 4.0GB 84.68MB 00:00:03 0.05 48:00:00 00:00:10 0.17 100.0MB 0B 0.29 0.01
canu.10.out 1 1 4.0GB 304.58MB 00:00:04 0.07 48:00:00 00:00:19 0.32 100.0MB 0B 0.22 0.01
canu.11.out 1 1 4.0GB 1.14GB 00:00:03 0.05 48:00:00 00:00:50 0.83 100.0MB 0B 0.06 0.03
canu.12.out 1 1 4.0GB 81.55MB 00:00:02 0.03 48:00:00 00:00:04 0.07 100.0MB 0B 0.43 0.00
canu.13.out 1 1 4.0GB 4.0GB 01:02:16 62.27 48:00:00 01:03:00 63.00 100.0MB 0B 0.99 2.10
canu.14.out 1 1 4.0GB 73.22MB 00:00:02 0.03 48:00:00 00:00:07 0.12 100.0MB 0B 0.25 0.00
canu.15.out 1 1 4.0GB 277.84MB 00:00:02 0.03 48:00:00 00:00:10 0.17 100.0MB 0B 0.18 0.01
canu.16.out 1 1 4.0GB 1.09GB 00:00:03 0.05 48:00:00 00:00:15 0.25 100.0MB 0B 0.20 0.01
canu.17.out 1 1 4.0GB 32.45MB 00:00:01 0.02 48:00:00 00:00:02 0.03 100.0MB 0B 0.67 0.00
canu.18.out 1 1 4.0GB 4.0GB 00:01:49 1.82 48:00:00 00:01:54 1.90 100.0MB 0B 0.96 0.06
canu.19.out 1 1 4.0GB 1.72GB 00:00:11 0.18 48:00:00 00:00:13 0.22 100.0MB 0B 0.82 0.01
canu.20.out 1 1 4.0GB 2.4GB 00:00:04 0.07 48:00:00 00:00:07 0.12 100.0MB 0B 0.58 0.00
canu.21.out 1 1 4.0GB 4.0GB 00:02:39 2.65 48:00:00 00:02:52 2.87 100.0MB 0B 0.92 0.10
canu.22.out 1 1 4.0GB 3.54GB 00:00:53 0.88 48:00:00 00:01:03 1.05 100.0MB 0B 0.84 0.04
canu.23.out 1 1 4.0GB 2.45GB 00:01:17 1.28 48:00:00 00:01:20 1.33 100.0MB 0B 0.96 0.04
canu.o 48 48 192.0GB 39.54GB 00:03:29 3.48 48:00:00 00:03:32 3.53 100.0MB 0B 0.02 5.65
# correction/0-mercounts
## Disk: 11M iNode: 35
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
meryl_BLR.o8904252 8 8 24.0GB 21.63GB 00:04:12 4.20 10:00:00 00:00:37 0.62 100.0MB 0B 0.85 0.16
meryl_BLR.o8903651 8 8 16.0GB 16.0GB 00:11:48 11.80 10:00:00 00:09:34 9.57 100.0MB 0B 0.15 2.55
# correction/1-overlapper
## Disk: 2.1M iNode: 179
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
cormhap_BLR.o8904978 480 480 1.88TB 596.61GB 50:39:42 3039.70 24:00:00 00:09:53 9.88 3.75TB 4.48GB 0.64 158.13
cormhap_BLR.o8904260 480 480 1.88TB 225.38GB 92:56:31 5576.52 24:00:00 00:16:14 16.23 3.75TB 8.16MB 0.72 259.73
# correction/2-correction
## Disk: 121M iNode: 119
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
cor_BLR.o8905525 240 240 960.0GB 181.19GB 140:33:30 8433.50 24:00:00 01:54:00 114.00 1.88TB 8.16MB 0.31 912.00
cor_BLR.o8912734 48 48 1.45TB 47.27GB 35:40:27 2140.45 24:00:00 01:48:56 108.93 1.36TB 4.49GB 0.41 261.44
cor_BLR.o8912722 48 48 1.45TB 62.0GB 56:04:24 3364.40 24:00:00 02:06:30 126.50 1.36TB 4.49GB 0.55 303.60
cor_BLR.o8912730 16 16 496.0GB 26.45GB 18:11:12 1091.20 24:00:00 01:47:36 107.60 464.0GB 4.49GB 0.63 86.08
cor_BLR.o8912726 8 8 248.0GB 16.39GB 08:19:14 499.23 24:00:00 01:29:57 89.95 232.0GB 4.49GB 0.69 35.98
# correction/BLR.corStore
## Disk: 2.6G iNode: 3
# trimming/0-mercounts
## Disk: 18M iNode: 39
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
meryl_BLR.o8918133 32 32 128.0GB 65.56GB 00:29:44 29.73 24:00:00 00:04:16 4.27 256.0GB 8.12MB 0.22 4.55
meryl_BLR.o8918356 8 8 24.0GB 12.35GB 00:05:31 5.52 10:00:00 00:00:58 0.97 100.0MB 0B 0.71 0.26
# trimming/1-overlapper
## Disk: 2.9M iNode: 156
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
obtovl_BLR.o8918424 480 480 1.88TB 410.7GB 652:46:49 39166.82 24:00:00 01:47:10 107.17 3.75TB 8.16MB 0.76 1714.67
# trimming/3-overlapbasedtrimming
## Disk: 116M iNode: 34
# unitigging/0-mercounts
## Disk: 16M iNode: 39
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
meryl_BLR.o8928366 8 8 24.0GB 11.09GB 00:05:23 5.38 10:00:00 00:00:47 0.78 100.0MB 0B 0.86 0.21
meryl_BLR.o8928113 32 32 128.0GB 60.15GB 00:29:19 29.32 24:00:00 00:04:55 4.92 256.0GB 8.12MB 0.19 5.24
# unitigging/1-overlapper
## Disk: 2.6M iNode: 147
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
utgovl_BLR.o8928424 480 480 1.88TB 374.95GB 1617:56:40 97076.67 24:00:00 04:45:16 285.27 3.75TB 8.16MB 0.71 4564.27
# unitigging/3-overlapErrorAdjustment
## Disk: 2.0G iNode: 209
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
oea_BLR.o8939744 41 41 1.24TB 56.58GB 25:43:14 1543.23 24:00:00 00:47:46 47.77 1.16TB 8.15MB 0.79 97.92
red_BLR.o8939584 480 480 1.88TB 713.02GB 48:08:57 2888.95 24:00:00 00:10:48 10.80 3.75TB 8.16MB 0.56 172.80
# unitigging/4-unitigger
## Disk: 3.3G iNode: 67
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
gfa_BLR.o8948513 8 8 16.0GB 2.76GB 00:27:29 27.48 10:00:00 00:03:52 3.87 100.0MB 0B 0.89 1.03
bat_BLR.o8948198 8 8 64.0GB 25.27GB 00:26:21 26.35 10:00:00 00:12:03 12.05 500.0MB 0B 0.27 4.82
# unitigging/5-consensus
## Disk: 700K iNode: 84
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
cns_BLR.o8948285 480 480 1.88TB 124.79GB 14:46:31 886.52 24:00:00 00:35:08 35.13 3.75TB 8.16MB 0.05 562.13
# unitigging/BLR.ctgStore
## Disk: 7.3G iNode: 36
# unitigging/BLR.ovlStore
## Disk: 13G iNode: 35
#JobName CPUs_requested CPUs_used Mem_requested Mem_used CPUtime CPUtime_mins Walltime_req Walltime_used Walltime_mins JobFS_req JobFS_used Efficiency Service_units(CPU_hours)
ovB_BLR.o8939446 2 2 8.0GB 8.0GB 00:01:48 1.80 24:00:00 00:01:15 1.25 16.0GB 8.04MB 0.72 0.08
ovS_BLR.o8939484 2 2 62.0GB 34.59GB 00:03:07 3.12 24:00:00 00:02:52 2.87 58.0GB 8.04MB 0.54 0.29
# unitigging/BLR.utgStore
## Disk: 7.2G iNode: 58
----------------------------------------------------------------
# correction/0-mercounts
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595460656.pbs meryl-count.sh normal 8 16G default er01 meryl_BLR default 1 8 16G
jobwrapper_1595461244.pbs meryl-process.sh normal 8 24G default er01 meryl_BLR default 1 8 24G
# correction/1-overlapper
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595462287.pbs mhap.sh normal 480 1920G 24:00:00 er01 cormhap_BLR 3840G 116 3 16G
jobwrapper_1595461294.pbs precompute.sh normal 480 1920G 24:00:00 er01 cormhap_BLR 3840G 46 3 16G
# correction/2-correction
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595470823.pbs correctReads.sh hugemem 48 1488G 24:00:00 er01 cor_BLR 1392G 12 12 4G
jobwrapper_1595470822.pbs correctReads.sh hugemem 8 248G 24:00:00 er01 cor_BLR 232G 2 2 4G
jobwrapper_1595463952.pbs correctReads.sh normal 240 960G 24:00:00 er01 cor_BLR 1920G 63 12 4G
# correction/BLR.corStore
## None
# trimming/0-mercounts
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595478841.pbs meryl-count.sh normal 32 128G 24:00:00 er01 meryl_BLR 256G 4 4 8G
jobwrapper_1595479136.pbs meryl-process.sh normal 8 24G default er01 meryl_BLR default 1 8 24G
# trimming/1-overlapper
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595479234.pbs overlap.sh normal 480 1920G 24:00:00 er01 obtovl_BLR 3840G 144 6 8G
# trimming/3-overlapbasedtrimming
## None
# unitigging/0-mercounts
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595490100.pbs meryl-count.sh normal 32 128G 24:00:00 er01 meryl_BLR 256G 4 4 8G
jobwrapper_1595490408.pbs meryl-process.sh normal 8 24G default er01 meryl_BLR default 1 8 24G
# unitigging/1-overlapper
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595490477.pbs overlap.sh normal 480 1920G 24:00:00 er01 utgovl_BLR 3840G 135 6 8G
# unitigging/3-overlapErrorAdjustment
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595508115.pbs red.sh normal 480 1920G 24:00:00 er01 red_BLR 3840G 113 8 6G
jobwrapper_1595508807.pbs oea.sh hugemem 41 1271G 24:00:00 er01 oea_BLR 1189G 41 41 1G
# unitigging/4-unitigger
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595534153.pbs unitigger.sh hugemem 8 64G default er01 bat_BLR default 1 8 64G
jobwrapper_1595537262.pbs alignGFA.sh normal 8 16G default er01 gfa_BLR default 1 8 16G
# unitigging/5-consensus
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595535074.pbs consensus.sh normal 480 1920G 24:00:00 er01 cns_BLR 3840G 78 6 8G
# unitigging/BLR.ctgStore
## None
# unitigging/BLR.ovlStore
## PBS_script task_script queue job_cpus job_mem job_walltime job_proj job_name job_jobfs num_tasks task_cpu task_mem
jobwrapper_1595507639.pbs 1-bucketize.sh normal 2 8G 24:00:00 er01 ovB_BLR 16G 2 2 1G
jobwrapper_1595507770.pbs 2-sort.sh hugemem 2 62G 24:00:00 er01 ovS_BLR 58G 2 2 1G
# unitigging/BLR.utgStore
## None
As the pipeline is still in development, we recognise that there are some caveats and are currently working on:
- Unique jobIDs to avoid overwriting files - done!
- Metrics obtained from Gadi log files (summarized in first part of compute resources used) have no direct link to PBS files (containing per task compute resource requirements)
The authors acknowledge the scientific and technical assistance <or e.g. bioinformatics assistance of > of Sydney Informatics Hub and resources and services from the National Computational Infrastructure (NCI), which is supported by the Australian Government with access facilitated by the University of Sydney.
If you would like bioinformatics assistance or support (e.g. preparing your NCMAS application), please contact sih.info@sydney.edu.au.